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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("geneplast")
In most cases, you don't need to download the package archive at all.
geneplast
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see geneplast.
Evolutionary and plasticity analysis based on orthologous groups distribution
Bioconductor version: 3.4
Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.
Author: Rodrigo Dalmolin, Mauro Castro
Maintainer: Mauro Castro <mauro.a.castro at gmail.com>
Citation (from within R,
enter citation("geneplast")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("geneplast")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("geneplast")
| R Script | Geneplast main vignette | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneRegulation, Genetics, Software, SystemsBiology |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.3), methods |
| Imports | snow, ape, grDevices, graphics, stats, utils |
| LinkingTo | |
| Suggests | BiocStyle, RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | geneplast_1.0.0.tar.gz |
| Windows Binary | geneplast_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | geneplast_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/geneplast/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/geneplast/ |
| Package Downloads Report | Download Stats |
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