To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ccmap")
In most cases, you don't need to download the package archive at all.
ccmap
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see ccmap.
Combination Connectivity Mapping
Bioconductor version: 3.4
Finds drugs and drug combinations that are predicted to reverse or mimic gene expression signatures. These drugs might reverse diseases or mimic healthy lifestyles.
Author: Alex Pickering
Maintainer: Alex Pickering <alexvpickering at gmail.com>
Citation (from within R,
enter citation("ccmap")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ccmap")
Documentation
| HTML | R Script | ccmap vignette |
| Reference Manual | ||
| Text | LICENSE |
Details
| biocViews | DifferentialExpression, GeneExpression, Microarray, Software, Transcription |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (0.5 years) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | AnnotationDbi(>= 1.34.4), BiocInstaller, ccdata(>= 0.99.4), doParallel (>= 1.0.10), data.table (>= 1.9.6), foreach (>= 1.4.3), parallel (>= 3.3.1), xgboost (>= 0.4.4) |
| LinkingTo | |
| Suggests | crossmeta, knitr, rmarkdown, testthat, lydata |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ccmap_1.0.0.tar.gz |
| Windows Binary | ccmap_1.0.0.zip |
| Mac OS X 10.9 (Mavericks) | ccmap_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ccmap/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/ccmap/ |
| Package Downloads Report | Download Stats |
Documentation »
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