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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SWATH2stats")
In most cases, you don't need to download the package archive at all.
SWATH2stats
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see SWATH2stats.
Transform and Filter SWATH Data for Statistical Packages
Bioconductor version: 3.3
This package is intended to transform SWATH data from the OpenSWATH software into a format readable by other statistics packages while performing filtering, annotation and FDR estimation.
Author: Peter Blattmann, Moritz Heusel and Ruedi Aebersold
Maintainer: Peter Blattmann <blattmann at imsb.biol.ethz.ch>
Citation (from within R,
enter citation("SWATH2stats")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("SWATH2stats")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SWATH2stats")
| R Script | SWATH2stats example script | |
| R Script | SWATH2stats package Vignette | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, ExperimentalDesign, MassSpectrometry, Preprocessing, Proteomics, Software |
| Version | 1.2.3 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1 year) |
| License | GPL-3 |
| Depends | R (>= 2.10.0) |
| Imports | data.table, reshape2, grid, ggplot2, stats |
| LinkingTo | |
| Suggests | testthat, MSstats, aLFQ, knitr |
| SystemRequirements | |
| Enhances | imsbInfer |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | SWATH2stats_1.2.3.tar.gz |
| Windows Binary | SWATH2stats_1.2.3.zip |
| Mac OS X 10.9 (Mavericks) | SWATH2stats_1.2.3.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/SWATH2stats/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/SWATH2stats/ |
| Package Downloads Report | Download Stats |
Documentation »
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