| Depends On Me |
AffiXcan, alabaster.se, batchCorr, betaHMM, BiocSklearn, bnbc, celaref, clusterExperiment, CoreGx, coseq, csaw, DESeq2, DEXSeq, diffcoexp, dinoR, divergence, evaluomeR, ExperimentSubset, ExpressionAtlas, FEAST, GenomicAlignments, GenomicSuperSignature, GRmetrics, hermes, HERON, HiCDOC, InteractionSet, iSEE, iSEEhex, iSEEhub, iSEEindex, ISLET, ivygapSE, lefser, LimROTS, LoomExperiment, made4, MBASED, MetNet, MGnifyR, mia, miaViz, MICSQTL, moanin, mpra, MultiAssayExperiment, multistateQTL, NBAMSeq, NewWave, notame, notameViz, orthos, padma, PDATK, PhIPData, PRONE, qmtools, qsvaR, QTLExperiment, ReducedExperiment, RegEnrich, RFLOMICS, ROCpAI, runibic, Scale4C, scAnnotatR, scGPS, screenCounter, SDAMS, sechm, SeqGate, SEtools, signatureSearch, SingleCellExperiment, SingleR, spillR, spqn, ssPATHS, stageR, survtype, TENxIO, tidySummarizedExperiment, TissueEnrich, TREG, VanillaICE, velociraptor, weitrix, yamss, zinbwave, airway, BioPlex, bodymapRat, celldex, curatedAdipoChIP, curatedAdipoRNA, curatedMetagenomicData, fission, GSVAdata, HDCytoData, HighlyReplicatedRNASeq, HMP16SData, MetaGxPancreas, MethylSeqData, MicrobiomeBenchmarkData, microbiomeDataSets, microRNAome, MouseGastrulationData, MouseThymusAgeing, ObMiTi, sampleClassifierData, scMultiome, spatialDmelxsim, spqnData, timecoursedata, tuberculosis, TumourMethData, DRomics, OncoSubtype, ordinalbayes |
| Imports Me |
ADAM, ADImpute, aggregateBioVar, airpart, ALDEx2, anansi, anglemania, animalcules, anota2seq, apeglm, APL, ASURAT, AUCell, autonomics, awst, Banksy, barbieQ, BASiCS, BASiCStan, batchelor, BatchQC, BatchSVG, BayesSpace, bayNorm, beer, BERT, bettr, BioGA, BioNERO, biotmle, blacksheepr, blase, BloodGen3Module, BreastSubtypeR, BulkSignalR, BUMHMM, BUScorrect, BUSseq, CaDrA, CalibraCurve, CARDspa, CATALYST, ccfindR, ccImpute, CDI, CelliD, CellMixS, CellTrails, censcyt, CeTF, CHETAH, CiteFuse, clustifyr, clustSIGNAL, cmapR, CoGAPS, combi, concordexR, condiments, consICA, Coralysis, corral, countsimQC, CPSM, CSOA, CTexploreR, CTSV, CuratedAtlasQueryR, cydar, cypress, CyTOFpower, cytoKernel, cytomapper, cytoviewer, DeconvoBuddies, DeeDeeExperiment, DEFormats, DEGreport, deltaCaptureC, DESpace, DEWSeq, diffcyt, DifferentialRegulation, Dino, DiscoRhythm, distinct, dittoSeq, DNEA, doppelgangR, doseR, DropletUtils, DspikeIn, Dune, easyRNASeq, eisaR, epistack, escheR, EWCE, FeatSeekR, findIPs, fishpond, FuseSOM, gCrisprTools, gDRcore, gDRimport, gDRutils, gemma.R, genomicInstability, GEOquery, GeoTcgaData, getDEE2, geyser, ggsc, ggspavis, Glimma, glmGamPoi, gscreend, GWENA, HarmonizR, HiContacts, HiCParser, HoloFoodR, hoodscanR, hummingbird, HybridExpress, iasva, IFAA, IgGeneUsage, ILoReg, imcRtools, iModMix, infercnv, iSEEde, iSEEfier, iSEEpathways, iSEEtree, iSEEu, IsoBayes, kmcut, LACE, lemur, limpca, lionessR, LipidTrend, lisaClust, looking4clusters, maaslin3, MAI, marr, MAST, mbkmeans, MBQN, MEB, MetaboAnnotation, MetaboDynamics, methyLImp2, methylscaper, miaDash, miaSim, miaTime, MicrobiotaProcess, midasHLA, miloR, MinimumDistance, miRSM, MLInterfaces, MLSeq, MoonlightR, MPAC, MPRAnalyze, MsExperiment, MsFeatures, mspms, msqrob2, MuData, MultiRNAflow, mumosa, muscat, mutscan, MWASTools, Nebulosa, NetActivity, netSmooth, nipalsMCIA, nnSVG, NormalyzerDE, oligoClasses, omicsGMF, omicsPrint, omicsViewer, oncomix, OVESEG, PAIRADISE, pairedGSEA, pairkat, peco, PepSetTest, pgxRpi, PharmacoGx, phenopath, PhosR, pipeComp, planttfhunter, plyxp, poem, PolySTest, POMA, POWSC, QFeatures, qsmooth, quantiseqr, RadioGx, RaggedExperiment, ReactomeGSA, RegionalST, regsplice, Rmmquant, RNAsense, rScudo, RTN, RUCova, SanityR, satuRn, SBGNview, SC3, SCArray, scater, scBFA, scCB2, scDD, scDDboost, scDesign3, scDiagnostics, scds, scGraphVerse, scHOT, scider, scmap, scMerge, scMET, scMultiSim, SCnorm, scp, scran, scReClassify, scry, scTensor, scTGIF, scuttle, scviR, SEraster, sesame, sigFeature, SimBu, simPIC, simpleSeg, SingleCellAlleleExperiment, singscore, slalom, slingshot, smartid, smoothclust, snapcount, sosta, SpaceTrooper, spacexr, Spaniel, SpaNorm, spARI, spaSim, SpatialCPie, spatialDE, SpatialExperiment, spatialFDA, spatialSimGP, SPIAT, spicyR, splatter, SplicingFactory, SplineDV, spoon, SpotClean, SpotSweeper, sSNAPPY, StabMap, Statial, stJoincount, supersigs, SurfR, SVMDO, SVP, switchde, systemPipeR, systemPipeTools, TCGAbiolinks, TCseq, tidybulk, tidySingleCellExperiment, tidySpatialExperiment, TOAST, tomoda, ToxicoGx, tpSVG, tradeSeq, TrajectoryUtils, transformGamPoi, treeclimbR, TreeSummarizedExperiment, Trendy, tricycle, TSCAN, TTMap, UCell, VAExprs, VDJdive, vidger, VisiumIO, visiumStitched, wpm, XAItest, xCell2, xcms, XeniumIO, xenLite, zellkonverter, zFPKM, zitools, brgedata, CLLmethylation, COSMIC.67, curatedTCGAData, DoReMiTra, easierData, FieldEffectCrc, GSE13015, HCATonsilData, HMP2Data, IHWpaper, LegATo, MerfishData, MetaGxBreast, MetaScope, orthosData, scRNAseq, SingleCellMultiModal, spatialLIBD, TabulaMurisSenisData, TCGAWorkflowData, TENET.ExperimentHub, TENxXeniumData, autoGO, DWLS, hicream, imcExperiment, karyotapR, MetAlyzer, microbial, mikropml, multimedia, PlasmaMutationDetector, RCPA, RNAseqQC, ROCnGO, scPipeline, scROSHI, SpatialDDLS, treediff, VSOLassoBag |
| Suggests Me |
alabaster.mae, AlpsNMR, ANCOMBC, anndataR, AnnotationHub, biobroom, COTAN, CTdata, dar, dcanr, dearseq, decoupleR, DelayedArray, easier, edgeR, EnMCB, epialleleR, esetVis, fobitools, funOmics, gDR, GENIE3, GenomicRanges, globalSeq, HDF5Array, HVP, Informeasure, InteractiveComplexHeatmap, iscream, knowYourCG, MatrixGenerics, mitology, MOFA2, MSnbase, pathwayPCA, philr, PSMatch, Rvisdiff, S4Vectors, scFeatureFilter, scLANE, scrapper, semisup, SETA, sketchR, sparrow, SPOTlight, systemPipeShiny, updateObject, biotmleData, curatedAdipoArray, curatedTBData, dorothea, DuoClustering2018, gDRtestData, GSE103322, multiWGCNAdata, pRolocdata, RforProteomics, SBGNview.data, tissueTreg, Canek, ClusterGVis, clustree, conos, CytoSimplex, dependentsimr, dyngen, file2meco, ggpicrust2, lfc, MiscMetabar, parafac4microbiome, polyRAD, RaceID, rliger, scStability, seqgendiff, Seurat, Signac, singleCellHaystack, speakeasyR, SuperCell, teal.slice, tidydr, volcano3D |
