# A single-cell RNAseq Shiny app-package

## Documentation for package ‘scRNAseqApp’ version 1.11.5

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

$-method | The methods for APPconf-class
$<--method | The methods for APPconf-class
APPconf | Class '"APPconf"'
APPconf-class | Class '"APPconf"'
APPconf-methods | The methods for APPconf-class
as.character-method | The methods for APPconf-class
as.list-method | The methods for APPconf-class
availableThemes | Available themes of color sets
createAppConfig | Create a metadata to describe the dataset
createDataSet | Create a dataset Create a dataset from a Seurat object. The function will try to find the markers in the Misc data named as 'markers'. The misc data should be output of function 'FindAllMarkers'.
createSeuFromCellRanger | load data from cellRanger
createSeuFromMatrix | load data from a count matrix
extractFragmentNameMapList | Extract fragment name map
lapply-method | The methods for APPconf-class
markers | The methods for APPconf-class
markers-method | The methods for APPconf-class
scInit | Create a scRNAseqApp project
scRNAseqApp | scRNAseqApp main function
show-method | The methods for APPconf-class
unlist-method | The methods for APPconf-class
[-method | The methods for APPconf-class
[[-method | The methods for APPconf-class
[[<--method | The methods for APPconf-class