Package: MSstatsBioNet
Type: Package
Title: Network Analysis for MS-based Proteomics Experiments
Version: 1.3.1
Authors@R: c(
    person("Anthony", "Wu", email = "wu.anthon@northeastern.edu", 
        role = c("aut", "cre"), comment = c(ORCID = "0009-0001-7391-9902")),
    person("Olga", "Vitek", email = "o.vitek@northeastern.edu", 
        role = "aut", comment=c(ORCID = "0000-0003-1728-1104"))) 
Description: A set of tools for network analysis using mass
        spectrometry-based proteomics data and network databases. The
        package takes as input the output of MSstats differential
        abundance analysis and provides functions to perform enrichment
        analysis and visualization in the context of prior knowledge
        from past literature. Notably, this package integrates with
        INDRA, which is a database of biological networks extracted
        from the literature using text mining techniques.
License: file LICENSE
Depends: R (>= 4.4.0), MSstats
Imports: RCy3, httr, jsonlite, r2r, tidyr
Suggests: data.table, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0),
        mockery, MSstatsConvert
VignetteBuilder: knitr
biocViews: ImmunoOncology, MassSpectrometry, Proteomics, Software,
        QualityControl, NetworkEnrichment, Network
Encoding: UTF-8
URL: http://msstats.org, https://vitek-lab.github.io/MSstatsBioNet/
BugReports: https://groups.google.com/forum/#!forum/msstats
Config/testthat/edition: 3
RoxygenNote: 7.3.3
Config/pak/sysreqs: cmake make libicu-dev libxml2-dev libssl-dev
        python3 libzmq3-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-11-05 23:51:59 UTC
RemoteUrl: https://github.com/bioc/MSstatsBioNet
RemoteRef: HEAD
RemoteSha: 5afd016a34a7f9b950c19c1f255266aaacf0514b
NeedsCompilation: no
Packaged: 2025-12-11 07:18:14 UTC; root
Author: Anthony Wu [aut, cre] (ORCID: <https://orcid.org/0009-0001-7391-9902>),
  Olga Vitek [aut] (ORCID: <https://orcid.org/0000-0003-1728-1104>)
Maintainer: Anthony Wu <wu.anthon@northeastern.edu>
Built: R 4.6.0; ; 2025-12-11 07:19:51 UTC; windows
