Package: DOSE
Type: Package
Title: Disease Ontology Semantic and Enrichment analysis
Version: 4.5.0
Authors@R: c( person(given = "Guangchuang", family = "Yu",        email = "guangchuangyu@gmail.com",   role = c("aut", "cre")),
              person(given = "Li-Gen",      family = "Wang",      email = "reeganwang020@gmail.com",   role = "ctb"),
              person(given = "Vladislav",   family = "Petyuk",    email = "petyuk@gmail.com",          role = "ctb"),
              person(given = "Giovanni",    family = "Dall'Olio", email = "giovanni.dallolio@upf.edu", role = "ctb"))
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: This package implements five methods proposed by Resnik,
        Schlicker, Jiang, Lin and Wang respectively for measuring
        semantic similarities among DO terms and gene products.
        Enrichment analyses including hypergeometric model and gene set
        enrichment analysis are also implemented for discovering
        disease associations of high-throughput biological data.
Depends: R (>= 3.5.0)
Imports: AnnotationDbi, BiocParallel, fgsea, ggplot2, GOSemSim (>=
        2.31.2), methods, qvalue, reshape2, stats, utils, yulab.utils
        (>= 0.1.6)
Suggests: prettydoc, clusterProfiler, gson (>= 0.0.5), knitr, memoise,
        org.Hs.eg.db, rmarkdown, testthat
VignetteBuilder: knitr
ByteCompile: true
License: Artistic-2.0
Encoding: UTF-8
URL: https://yulab-smu.top/contribution-knowledge-mining/
BugReports: https://github.com/GuangchuangYu/DOSE/issues
Packaged: 2025-10-30 05:27:47 UTC; root
biocViews: Annotation, Visualization, MultipleComparison,
        GeneSetEnrichment, Pathways, Software
RoxygenNote: 7.3.2
Config/pak/sysreqs: make libicu-dev libpng-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:07:51 UTC
RemoteUrl: https://github.com/bioc/DOSE
RemoteRef: HEAD
RemoteSha: 47174f9122043a7b39a07b80a27e4f60f6c90433
NeedsCompilation: no
Author: Guangchuang Yu [aut, cre],
  Li-Gen Wang [ctb],
  Vladislav Petyuk [ctb],
  Giovanni Dall'Olio [ctb]
Built: R 4.6.0; ; 2025-10-30 05:31:00 UTC; windows
