Bioconductor release scheduled for October 29

rigvf

This is the development version of rigvf; for the stable release version, see rigvf.

R interface to the IGVF Catalog


Bioconductor version: Development (3.22)

The IGVF Catalog provides data on the impact of genomic variants on function. The `rigvf` package provides an interface to the IGVF Catalog, allowing easy integration with Bioconductor resources.

Author: Martin Morgan [aut] ORCID iD ORCID: 0000-0002-5874-8148 , Michael Love [aut, cre] ORCID iD ORCID: 0000-0001-8401-0545 , NIH NHGRI UM1HG012003 [fnd]

Maintainer: Michael Love <michaelisaiahlove at gmail.com>

Citation (from within R, enter citation("rigvf")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rigvf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews Annotation, FunctionalGenomics, GeneRegulation, GeneTarget, GenomicVariation, Software, ThirdPartyClient, VariantAnnotation
Version 1.1.3
In Bioconductor since BioC 3.21 (R-4.5) (< 6 months)
License MIT + file LICENSE
Depends R (>= 4.1.0)
Imports methods, httr2, rjsoncons, dplyr, tidyr, rlang, memoise, cachem, whisker, jsonlite, GenomicRanges, IRanges, Seqinfo
System Requirements
URL https://IGVF.github.io/rigvf
Bug Reports https://github.com/IGVF/rigvf/issues
See More
Suggests knitr, rmarkdown, testthat (>= 3.0.0), plyranges, plotgardener, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64) rigvf_1.1.3.zip
macOS Binary (x86_64) rigvf_1.1.3.tgz
macOS Binary (arm64) rigvf_1.1.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/rigvf
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rigvf
Bioc Package Browser https://code.bioconductor.org/browse/rigvf/
Package Short Url https://bioconductor.org/packages/rigvf/
Package Downloads Report Download Stats