Bioconductor release scheduled for October 29

miaDash

This is the development version of miaDash; for the stable release version, see miaDash.

Dashboard for the interactive analysis and exploration of microbiome data


Bioconductor version: Development (3.22)

miaDash provides a Graphical User Interface for the exploration of microbiome data. This way, no knowledge of programming is required to perform analyses. Datasets can be imported, manipulated, analysed and visualised with a user-friendly interface.

Author: Giulio Benedetti [aut, cre] ORCID iD ORCID: 0000-0002-8732-7692 , Akewak Jeba [ctb] ORCID iD ORCID: 0009-0007-1347-7552 , Leo Lahti [aut] ORCID iD ORCID: 0000-0001-5537-637X

Maintainer: Giulio Benedetti <giulio.benedetti at utu.fi>

Citation (from within R, enter citation("miaDash")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("miaDash")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews DataImport, GUI, Microbiome, ShinyApps, Software, Visualization
Version 1.1.5
In Bioconductor since BioC 3.21 (R-4.5) (< 6 months)
License Artistic-2.0
Depends R (>= 4.4.0), iSEE(>= 2.19.4), shiny
Imports ape, bluster, htmltools, iSEEtree(>= 1.1.4), mia, rintrojs, scater, scuttle, shinydashboard, shinyjs, shinyWidgets, S4Vectors, SingleCellExperiment, SummarizedExperiment, TreeSummarizedExperiment, utils, vegan
System Requirements
URL https://github.com/microbiome/miaDash
Bug Reports https://github.com/microbiome/miaDash/issues
See More
Suggests BiocStyle, knitr, philr, remotes, rmarkdown, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/miaDash
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/miaDash
Package Short Url https://bioconductor.org/packages/miaDash/
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