ROTS
This is the development version of ROTS; for the stable release version, see ROTS.
Reproducibility-Optimized Test Statistic
Bioconductor version: Development (3.22)
Calculates the Reproducibility-Optimized Test Statistic (ROTS) for differential testing in omics data.
Author: Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo
Maintainer: Tomi Suomi <tomi.suomi at utu.fi>
Citation (from within R, enter
citation("ROTS")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ROTS")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ROTS")| ROTS: Reproducibility Optimized Test Statistic | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, ImmunoOncology, Microarray, Proteomics, RNASeq, Software |
| Version | 2.1.1 |
| In Bioconductor since | BioC 3.3 (R-3.3) (9.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.6) |
| Imports | Rcpp, stats, Biobase, methods, BiocParallel, lme4 |
| System Requirements | |
| URL |
See More
| Suggests | testthat |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | PECA, PRONE, RolDE |
| Suggests Me | LimROTS, wrProteo |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ROTS_2.1.1.tar.gz |
| Windows Binary (x86_64) | ROTS_2.1.1.zip |
| macOS Binary (x86_64) | ROTS_2.1.1.tgz |
| macOS Binary (arm64) | ROTS_2.1.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ROTS |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ROTS |
| Bioc Package Browser | https://code.bioconductor.org/browse/ROTS/ |
| Package Short Url | https://bioconductor.org/packages/ROTS/ |
| Package Downloads Report | Download Stats |