annotatedData           Accessors for the betaHMM package.
annotation_data         MethylationEPIC manifest data.
betaHMM                 HMM for beta valued DNA data
betaHMMResults-class    betaHMMResults object and constructor
betaHMMrun              The betaHMM model parameter estimation function
dmcResults-class        dmcResults object and constructor
dmc_identification      DMC identification from estimated betaHMM model
                        parameters
dmc_identification_run
                        DMC identification from estimated betaHMM model
                        parameters
dmrResults-class        dmrResults object and constructor
dmr_identification      DMR identification from DMCs identified
dmr_identification_run
                        DMR identification from DMCs identified
pca_methylation_data    Simulated DNA methylation data
plot                    Visualize results from 'betaHMM'/
                        'dmc_identification'/
                        'threshold_identification' functions.
sample_annotation_file
                        MethylationEPIC manifest data.
sample_methylation_file
                        Simulated DNA methylation data
summary                 Summarize results from the three betaHMM
                        workflow functions
threshold_Results-class
                        threshold_Results object and constructor
threshold_identification
                        HMM for beta valued DNA data for a single
                        treatment condition
threshold_identification_run
                        Threshold indentification function
