# Installation

## System requirements

- R >= 4.0.0 (current)

- Rstudio (recommended)

## Install from Bioconductor

sangeranalyseR is on Bioconductor 3.12 development now.

Figure 1. sangeranalyseR on Bioconductor 3.12 development.

To install this package, start R (version "4.0") and enter:

    if (!requireNamespace("BiocManager", quietly = TRUE))
        install.packages("BiocManager")

    # The following initializes usage of Bioc devel
    BiocManager::install(version='devel')

    BiocManager::install("sangeranalyseR")

## Install the development version

If you haven't installed the `devtools` package before, please install it first:

    install.packages("devtools")

Then run the following code in your R console to install the newest version from Github.

    library(devtools)

    ## Install the release version
    install_github("roblanf/sangeranalyseR", ref = "master")

    ## Install the development version
    install_github("roblanf/sangeranalyseR", ref = "develop")
    library(sangeranalyseR)

After installing `sangeranalyseR`, load it in R console.

    library(sangeranalyseR)

Now, you are ready to go !

## Where to go from here ?

Please continue to the Quick Start Guide or the more detailed Beginners Guide.