beachmat.tiledb
This package is for version 3.21 of Bioconductor; for the stable, up-to-date release version, see beachmat.tiledb.
beachmat bindings for TileDB-backed matrices
Bioconductor version: 3.21
Extends beachmat to initialize tatami matrices from TileDB-backed arrays. This allows C++ code in downstream packages to directly call the TileDB C/C++ library to access array data, without the need for block processing via DelayedArray. Developers only need to import this package to automatically extend the capabilities of beachmat::initializeCpp to TileDBArray instances.
Author: Aaron Lun [aut, cre]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("beachmat.tiledb")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("beachmat.tiledb")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("beachmat.tiledb")| User guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, DataRepresentation, Infrastructure, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.21 (R-4.5) (0.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | methods, beachmat, tiledb, TileDBArray, DelayedArray, Rcpp |
| System Requirements | C++17 |
| URL | https://github.com/tatami-inc/beachmat.tiledb |
| Bug Reports | https://github.com/tatami-inc/beachmat.tiledb/issues |
See More
| Suggests | testthat, BiocStyle, knitr, rmarkdown, Matrix |
| Linking To | Rcpp, assorthead, beachmat |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | beachmat.tiledb_1.0.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | beachmat.tiledb_1.0.0.tgz |
| macOS Binary (arm64) | beachmat.tiledb_1.0.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/beachmat.tiledb |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/beachmat.tiledb |
| Bioc Package Browser | https://code.bioconductor.org/browse/beachmat.tiledb/ |
| Package Short Url | https://bioconductor.org/packages/beachmat.tiledb/ |
| Package Downloads Report | Download Stats |