Package: vulcan
Type: Package
Title: VirtUaL ChIP-Seq data Analysis using Networks
Version: 1.30.0
Author: Federico M. Giorgi, Andrew N. Holding, Florian Markowetz
Maintainer: Federico M. Giorgi <federico.giorgi@gmail.com>
Description: Vulcan (VirtUaL ChIP-Seq Analysis through Networks) is a package
    that interrogates gene regulatory networks to infer cofactors
    significantly enriched in a differential binding signature coming from
    ChIP-Seq data.
    In order to do so, our package combines strategies from different
    BioConductor packages: DESeq for data normalization, ChIPpeakAnno and
    DiffBind for annotation and definition of ChIP-Seq genomic peaks,
    csaw to define optimal peak width and viper for applying a regulatory
    network over a differential binding signature.
License: LGPL-3
biocViews: SystemsBiology, NetworkEnrichment, GeneExpression, ChIPSeq
NeedsCompilation: no
Suggests: vulcandata
Depends: R (>= 4.0), ChIPpeakAnno,TxDb.Hsapiens.UCSC.hg19.knownGene,
        zoo, GenomicRanges, S4Vectors, viper, DiffBind, locfit
Imports: wordcloud, csaw, gplots, stats, utils, caTools, graphics,
        DESeq2, Biobase
Encoding: UTF-8
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/vulcan
git_branch: RELEASE_3_21
git_last_commit: e42168d
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
Packaged: 2025-04-16 04:24:57 UTC; biocbuild
Built: R 4.5.0; ; 2025-04-16 15:48:03 UTC; windows
