baselineCorrect.pSet	baselineCorrect.pSet
baseline_correct	baseline_correct
clade	peptideSet-methods
clade,GRanges-method	peptideSet-methods
clade,peptideSet-method	peptideSet-methods
clade-methods	peptideSet-methods
create_db	create_db
end,peptideSet-method	peptideSet-methods
featureID	peptideSet-methods
featureID,peptideSet-method	peptideSet-methods
featureID-method	peptideSet-methods
makeCalls	makeCalls
makePeptideSet	makePeptideSet
NormalizeArray	normalizeArray
normalizeArray	normalizeArray
peptide	peptideSet-methods
peptide,peptideSet-method	peptideSet-methods
peptide-method	peptideSet-methods
peptide<-	peptideSet-methods
peptide<-,peptideSet,character-method	peptideSet-methods
peptideSet	peptideSet
peptideSet-class	peptideSet
peptideSet-methods	peptideSet-methods
pepZscore	peptideSet-methods
pepZscore,GRanges-method	peptideSet-methods
pepZscore,peptideSet-method	peptideSet-methods
pepZscore-method	peptideSet-methods
pepZscore<-	peptideSet-methods
pepZscore<-,GRanges,data.frame-method	peptideSet-methods
pepZscore<-,peptideSet,data.frame-method	peptideSet-methods
plotArrayImage	plotArray
plotArrayResiduals	plotArray
position	peptideSet-methods
position,peptideSet-method	peptideSet-methods
position-method	peptideSet-methods
ranges,peptideSet-method	peptideSet-methods
ranges<-,peptideSet-method	peptideSet-methods
restab	restab
shinyPepStat	shinyPepStat
show,peptideSet-method	peptideSet-methods
slidingMean	slidingMean
start,peptideSet-method	peptideSet-methods
subset,peptideSet-method	peptideSet-methods
summarizePeptides	summarizePeptides
summary,peptideSet-method	peptideSet-methods
values,peptideSet-method	peptideSet-methods
width,peptideSet-method	peptideSet-methods
[,peptideSet,ANY,ANY,ANY-method	peptideSet-methods
