848c79eb8e79ef96c5b9039599429cd4 *DESCRIPTION
7b87d02f9ff8b0cc1df84964c190fd22 *INDEX
ca412ce47ed28b86ee2fabd03cce0db4 *Meta/Rd.rds
534086b8c3b6c93c88c349e164a30dca *Meta/data.rds
41622305d1b139d0fa70aaba76dca134 *Meta/features.rds
5fc28240fc6c6607e7a4ff5e4e021624 *Meta/hsearch.rds
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3e09f26e5e5469420cdf358ef1e09fad *Meta/nsInfo.rds
ba7b7458ad1192eb1f1a0fcc2fbe7dba *Meta/package.rds
5f0dc5ed034e4b4c30f62194037a485c *Meta/vignette.rds
8ce8123007c8467c359323a3a3b35ca2 *NAMESPACE
7204efa0a7af79d7e5bc0c2df94afcab *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/pathwayPCA
f88524d2d1ef99818461159505c05ebd *R/pathwayPCA.rdb
ef34434d1207c56a2009501f82b593b5 *R/pathwayPCA.rdx
f33eb7e4453e8ceb730eba1275639fca *data/colonSurv_df.rda
7e5d959e883cb932a78bae6bb0633868 *data/colon_pathwayCollection.rda
8c3c26a271e0a04f541392dcc50bdd12 *data/datalist
b2df0886cdd6b6eb43d6e8c03013b9c9 *data/wikipwsHS_Entrez_pathwayCollection.rda
e98c53533bf9e59e3c11f7eb1348ecba *data/wikipwsHS_Symbol_pathwayCollection.rda
7e1ab992dd2a3dc5976664845fcefd36 *doc/Introduction_to_pathwayPCA.R
d053df02b0ca951eaf2a2525f1b6e9e1 *doc/Introduction_to_pathwayPCA.Rmd
024b98fe75d67228b8313fb32645f637 *doc/Introduction_to_pathwayPCA.html
f1efba6614e81d01225fff63716f152f *doc/Supplement1-Quickstart_Guide.R
2be8142af557d037b1485c794ed3d87a *doc/Supplement1-Quickstart_Guide.Rmd
f072c2b90899679d4c59e7648efd6820 *doc/Supplement1-Quickstart_Guide.html
f888b5216be00dfc27a2c28008d38734 *doc/Supplement2-Importing_Data.R
8c1115576415553ea1dc79734c9b0d0f *doc/Supplement2-Importing_Data.Rmd
fc1c3887dd9079abe7fdb1ddceed914b *doc/Supplement2-Importing_Data.html
6c6dbe2bcd8d1df74b286180e3fb64d1 *doc/Supplement3-Create_Omics_Objects.R
2535a20774599b4a30b24fb148c15ff8 *doc/Supplement3-Create_Omics_Objects.Rmd
b692978e1ae41afaba63b148b556694e *doc/Supplement3-Create_Omics_Objects.html
8335c69dfdc9d6bb9787570250996616 *doc/Supplement4-Methods_Walkthrough.R
67d6220efb2eaf43049d0aef4c35a4ab *doc/Supplement4-Methods_Walkthrough.Rmd
bf870b42f99eff6ade1eb7d8a5e87091 *doc/Supplement4-Methods_Walkthrough.html
7abf857e5f1729809488cc281360cbfb *doc/Supplement5-Analyse_Results.R
c028c5eb0b6f22b6ebcf46c50e2ea9ce *doc/Supplement5-Analyse_Results.Rmd
d8994e870b67824049d1aa61592c25cf *doc/Supplement5-Analyse_Results.html
ed16e29e5d9826ff978b530b7db94cfd *doc/index.html
99811158213c6dfa6a24feff2be88ee5 *extdata/c2.cp.v6.0.symbols.gmt
74685fc5d77c3936fef2a0e0c9e1901b *extdata/ex_assay_subset.csv
0e7c901389cf3fcdc5ce562933cc7057 *extdata/ex_pInfo_subset.csv
efdfb2f3fc05c7e045d081fecbd11de2 *extdata/wikipathways_human.gmt
1f033164408ecaa9106ecee1ed39b304 *extdata/wikipathways_human_symbol.gmt
d3f9556dfc043db23e7d70d0833b727c *help/AnIndex
58c935957f7d6e2694b4e7589b7b74cc *help/aliases.rds
155bab0e72bd2d1f4d745a9ae74ec92d *help/paths.rds
2e4e1ffecb86fb906e170a7636bbcf41 *help/pathwayPCA.rdb
e6206971b0e723bbf236f286570bdad9 *help/pathwayPCA.rdx
17d2a826a9fb280da60f3536ed6e398d *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
64ac06624895b3668f873d9e0df8383f *scripts/convert_EntrezID_to_HGNC_Ensembl.R
6eb59c22577664c03556dca3af6babfa *scripts/create_airway_example.R
10e4c4bf49a5517a9bac852dbcfeb0b7 *scripts/generate_ex_subset.R
01468ffb17b9b43a1264cfdcb8d23961 *scripts/import_AP_gmt_20180601.R
fc855d6612c935a5cfe91b4c07e2d7a8 *scripts/issue_65_20220222.R
e41fba24c300c0b54f8c8047be76ceee *scripts/multi_pathway_overlap_fishers.R
