To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("motifRG")

In most cases, you don't need to download the package archive at all.

motifRG

This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see motifRG.

A package for discriminative motif discovery, designed for high throughput sequencing dataset

Bioconductor version: 3.1

Tools for discriminative motif discovery using regression methods

Author: Zizhen Yao

Maintainer: Zizhen Yao <yzizhen at fhcrc.org>

Citation (from within R, enter citation("motifRG")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("motifRG")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("motifRG")

PDF	R Script	motifRG: regression-based discriminative motif discovery
PDF		Reference Manual

biocViews	MotifDiscovery, Software, Transcription
Version	1.12.0
In Bioconductor since	BioC 2.10 (R-2.15) (4 years)
License	Artistic-2.0
Depends	R (>= 2.15), Biostrings(>= 2.26), IRanges, seqLogo, parallel, methods, grid, graphics, BSgenome, XVector, BSgenome.Hsapiens.UCSC.hg19
Imports	Biostrings, IRanges, seqLogo, parallel, methods, grid, graphics, XVector
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Build Report

Follow Installation instructions to use this package in your R session.

Package Source	motifRG_1.12.0.tar.gz
Windows Binary	motifRG_1.12.0.zip
Mac OS X 10.6 (Snow Leopard)	motifRG_1.12.0.tgz
Mac OS X 10.9 (Mavericks)	motifRG_1.12.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/motifRG/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/motifRG/
Package Downloads Report	Download Stats

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