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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rhtslib")
In most cases, you don't need to download the package archive at all.
Rhtslib
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see Rhtslib.
HTSlib high-throughput sequencing library as an R package
Bioconductor version: 3.1
This package provides version 1.1 of the 'HTSlib' C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package="Rhtslib", "Rhtslib").
Author: Nathaniel Hayden [cre, aut], Martin Morgan [aut]
Maintainer: Nathaniel Hayden <nhayden at fredhutch.org>
Citation (from within R,
enter citation("Rhtslib")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rhtslib")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rhtslib")
| HTML | R Script | Motivation and Use of Rhtslib |
| Reference Manual |
Details
| biocViews | DataImport, Sequencing, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (1 year) |
| License | LGPL (>= 2) |
| Depends | |
| Imports | zlibbioc |
| LinkingTo | zlibbioc |
| Suggests | BiocStyle, knitr |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/nhayden/Rhtslib http://www.htslib.org/ |
| BugReports | https://github.com/nhayden/Rhtslib |
| Depends On Me | deepSNV |
| Imports Me | deepSNV |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | Rhtslib_1.0.0.tar.gz |
| Windows Binary | Rhtslib_1.0.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | Rhtslib_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | Rhtslib_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/Rhtslib/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/Rhtslib/ |
| Package Downloads Report | Download Stats |
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