To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MBASED")
In most cases, you don't need to download the package archive at all.
MBASED
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see MBASED.
Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection
Bioconductor version: 3.1
The package implements MBASED algorithm for detecting allele-specific gene expression from RNA count data, where allele counts at individual loci (SNVs) are integrated into a gene-specific measure of ASE, and utilizes simulations to appropriately assess the statistical significance of observed ASE.
Author: Oleg Mayba, Houston Gilbert
Maintainer: Oleg Mayba <mayba.oleg at gene.com>
Citation (from within R,
enter citation("MBASED")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MBASED")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MBASED")
| R Script | MBASED | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | GeneExpression, Sequencing, Software, Transcription |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (1.5 years) |
| License | Artistic-2.0 |
| Depends | RUnit, BiocGenerics, BiocParallel, GenomicRanges |
| Imports | |
| LinkingTo | |
| Suggests | BiocStyle |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | MBASED_1.2.0.tar.gz |
| Windows Binary | MBASED_1.2.0.zip |
| Mac OS X 10.6 (Snow Leopard) | MBASED_1.2.0.tgz |
| Mac OS X 10.9 (Mavericks) | MBASED_1.2.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/MBASED/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/MBASED/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
