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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChemmineOB")
In most cases, you don't need to download the package archive at all.
ChemmineOB
|
This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see ChemmineOB.
R interface to a subset of OpenBabel functionalities
Bioconductor version: 3.1
ChemmineOB provides an R interface to a subset of cheminformatics functionalities implemented by the OpelBabel C++ project. OpenBabel is an open source cheminformatics toolbox that includes utilities for structure format interconversions, descriptor calculations, compound similarity searching and more. ChemineOB aims to make a subset of these utilities available from within R. For non-developers, ChemineOB is primarily intended to be used from ChemmineR as an add-on package rather than used directly.
Author: Kevin Horan, Thomas Girke
Maintainer: Thomas Girke <thomas.girke at ucr.edu>
Citation (from within R,
enter citation("ChemmineOB")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChemmineOB")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChemmineOB")
| HTML | R Script | ChemmineOB |
| Reference Manual | ||
| Text | README | |
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | BiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization |
| Version | 1.6.1 |
| In Bioconductor since | BioC 2.13 (R-3.0) (2.5 years) |
| License | file LICENSE |
| Depends | R (>= 2.15.1), methods |
| Imports | BiocGenerics, zlibbioc, Rcpp (>= 0.11.0) |
| LinkingTo | BH, Rcpp |
| Suggests | ChemmineR, BiocStyle, knitr, knitcitations, knitrBootstrap |
| SystemRequirements | OpenBabel (>= 2.3.1) with headers. http://openbabel.org |
| Enhances | ChemmineR(>= 2.13.0) |
| URL | https://github.com/girke-lab/ChemmineOB |
| Depends On Me | |
| Imports Me | |
| Suggests Me | ChemmineR |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ChemmineOB_1.6.1.tar.gz |
| Windows Binary | ChemmineOB_1.6.1.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | ChemmineOB_1.6.1.tgz |
| Mac OS X 10.9 (Mavericks) | ChemmineOB_1.6.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ChemmineOB/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/ChemmineOB/ |
| Package Downloads Report | Download Stats |
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