\name{TMT6}
\alias{TMT6}
\alias{TMT7}
\docType{data}

\title{ TMT 6-plex set }

\description{
  This instance of class \code{"\linkS4class{ReporterIons}"} corresponds
  to the TMT 6-plex set, i.e the 126, 127, 128, 129, 130 and 131
  isobaric tags. In the TMT7 data set, an unfragmented tag, i.e reporter
  and attached isobaric tag, is also included at MZ 229.
  These objects are used to plot the reporter ions of interest in an
  MSMS spectra (see \code{"\linkS4class{Spectrum2}"}) as well as for
  quantification (see \code{\link{quantify}}).
}

\usage{
TMT6
TMT7
}

\references{
  Thompson A, Sch\"{a}fer J, Kuhn K, Kienle S, Schwarz J, Schmidt G,
  Neumann T, Johnstone R, Mohammed AK, Hamon C.
  "Tandem mass tags: a novel quantification strategy for comparative
  analysis of complex protein mixtures by MS/MS."
  \emph{Anal Chem.} 2003 Apr 15;75(8):1895-904. \emph{Erratum} in:
  \emph{Anal Chem.} 2006 Jun 15;78(12):4235. Mohammed, A Karim A [added]
  and  
  \emph{Anal Chem.} 2003 Sep 15;75(18):4942. Johnstone, R [added].
  PubMed PMID: 12713048. 
}

\examples{
TMT6
TMT6[1:2]

newReporter <- new("ReporterIons",
                   description="an example",
                   name="my reporter ions",
                   reporterNames=c("myrep1","myrep2"),
                   mz=c(121,122),
                   col=c("red","blue"),
                   width=0.05)
newReporter
}

\seealso{
  \code{\link{iTRAQ4}}.
}

\keyword{datasets}