To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("isobar")
In most cases, you don't need to download the package archive at all.
isobar
|
This package is for version 2.9 of Bioconductor; for the stable, up-to-date release version, see isobar.
Analysis and quantitation of isobarically tagged MSMS proteomics data
Bioconductor version: 2.9
isobar provides methods for preprocessing, normalization, and report generation for the analysis of quantitative mass spectrometry proteomics data labeled with isobaric tags, such as iTRAQ and TMT.
Author: Florian P Breitwieser <fbreitwieser at cemm.oeaw.ac.at> and Jacques Colinge <jcolinge at cemm.oeaw.ac.at>, with contributions from Xavier Robin <xavier.robin at unige.ch>
Maintainer: Florian P Breitwieser <fbreitwieser at cemm.oeaw.ac.at>
Citation (from within R,
enter citation("isobar")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("isobar")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("isobar")
| isobar-devel.pdf | ||
| isobar.pdf | ||
| Reference Manual |
Details
| biocViews | Bioinformatics, MassSpectrometry, MultipleComparisons, Proteomics, QualityControl, Software |
| Version | 1.1.1 |
| In Bioconductor since | BioC 2.9 (R-2.14) (4.5 years) |
| License | LGPL-2 |
| Depends | R (>= 2.9.0), Biobase, stats, methods, ggplot2, plyr |
| Imports | distr, biomaRt |
| LinkingTo | |
| Suggests | MSnbase, OrgMassSpecR, XML |
| SystemRequirements | |
| Enhances | |
| URL | http://bioinformatics.cemm.oeaw.ac.at |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | isobar_1.1.1.tar.gz |
| Windows Binary | isobar_1.1.1.zip |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/isobar/tree/release-2.9 |
| Package Short Url | http://bioconductor.org/packages/isobar/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
