To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GWASTools")

In most cases, you don't need to download the package archive at all.

GWASTools

This package is for version 2.9 of Bioconductor; for the stable, up-to-date release version, see GWASTools.

GWASTools: Tools for Genome Wide Association Studies

Bioconductor version: 2.9

Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis.

Author: Stephanie Gogarten, Cathy Laurie, Tushar Bhangale, Matt Conomos, Cecilia Laurie, Caitlin McHugh, Ian Painter, Xiuwen Zheng, Rohit Swarnkar

Maintainer: Stephanie Gogarten <sdmorris at u.washington.edu>

Citation (from within R, enter citation("GWASTools")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GWASTools")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GWASTools")

PDF		DataCleaning.pdf
PDF		Reference Manual

biocViews	GeneticVariability, Microarray, QualityControl, SNP, Software
Version	1.0.0
In Bioconductor since	BioC 2.9 (R-2.14) (4.5 years)
License	Artistic-2.0
Depends	Biobase, ncdf, GWASExactHW, sandwich
Imports	methods, DBI, RSQLite, DNAcopy, survival
LinkingTo
Suggests	GWASdata, RUnit, gdsfmt, SNPRelate
SystemRequirements
Enhances
URL
Depends On Me	GWASdata
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	GWASTools_1.0.0.tar.gz
Windows Binary	GWASTools_1.0.0.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/GWASTools/tree/release-2.9
Package Short Url	http://bioconductor.org/packages/GWASTools/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: