To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

In most cases, you don't need to download the package archive at all.

clusterProfiler

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see clusterProfiler.

statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: 2.8

The package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("clusterProfiler")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("clusterProfiler")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("clusterProfiler")

PDF		clusterProfiler.pdf
PDF		Reference Manual

biocViews	Bioinformatics, Clustering, GO, MultipleComparisons, Pathways, Software, Visualization
Version	1.0.6
In Bioconductor since	BioC 2.8 (R-2.13) (5 years)
License	Artistic-2.0
Depends	stats, plyr, ggplot2
Imports	methods, qvalue, AnnotationDbi, GO.db, KEGG.db, org.Hs.eg.db, org.Mm.eg.db, org.Sc.sgd.db
LinkingTo
Suggests	GOSemSim
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	GOSemSim
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	clusterProfiler_1.0.6.tar.gz
Windows Binary	clusterProfiler_1.0.6.zip
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/clusterProfiler/tree/release-2.8
Package Short Url	http://bioconductor.org/packages/clusterProfiler/
Package Downloads Report	Download Stats

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