To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeneGA")
In most cases, you don't need to download the package archive at all.
GeneGA
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see GeneGA.
Design gene based on both mRNA secondary structure and codon usage bias using Genetic algorithm
Bioconductor version: 2.8
R based Genetic algorithm for gene expression optimization by considering both mRNA secondary structure and codon usage bias, GeneGA includes the information of highly expressed genes of almost 200 genomes.
Author: Zhenpeng Li, Fei Li, Xiaochen Bo and Shengqi Wang
Maintainer: Zhenpeng Li <zpli21 at gmail.com>
Citation (from within R,
enter citation("GeneGA")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeneGA")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneGA")
| GeneGA.pdf | ||
| Reference Manual |
Details
| biocViews | GeneExpression, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (5.5 years) |
| License | GPL version 2 |
| Depends | GeneRfold, seqinr, hash, methods |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GeneGA_1.2.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/GeneGA/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/GeneGA/ |
| Package Downloads Report | Download Stats |
Documentation »
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