| Package | Maintainer | Title |
|---|---|---|
| bgafun | Iain Wallace | BGAfun A method to identify specifity determining residues in protein families |
| BioSeqClass | Li Hong | Classification for Biological Sequences |
| Clonality | Irina Ostrovnaya | Clonality testing |
| clst | Noah Hoffman | Classification by local similarity threshold |
| clstutils | Noah Hoffman | Tools for performing taxonomic assignment. |
| CMA | Christoph Bernau | Synthesis of microarray-based classification |
| CRImage | Henrik Failmezger , Yinyin Yuan | CRImage a package to classify cells and calculate tumour cellularity |
| ctc | Antoine Lucas | Cluster and Tree Conversion. |
| eisa | Gabor Csardi | Expression data analysis via the Iterative Signature Algorithm |
| ExpressionView | Gabor Csardi | Visualize biclusters identified in gene expression data |
| flowPhyto | David M. Schruth | Methods for Continuous Flow Cytometry |
| gaga | David Rossell | GaGa hierarchical model for microarray data analysis |
| gene2pathway | Holger Froehlich | Prediction of KEGG pathway membership for individual genes based on InterPro domain signatures |
| gpls | Biocore Team c/o BioC user list | Classification using generalized partial least squares |
| iterativeBMA | Ka Yee Yeung | The Iterative Bayesian Model Averaging (BMA) algorithm |
| logicFS | Holger Schwender | Identification of SNP Interactions |
| made4 | Aedin Culhane | Multivariate analysis of microarray data using ADE4 |
| maigesPack | Gustavo H. Esteves | Functions to handle cDNA microarray data, including several methods of data analysis |
| MCRestimate | Marc Johannes | Misclassification error estimation with cross-validation |
| methVisual | Arie Zackay | Methods for visualization and statistics on DNA methylation data |
| MiPP | Sukwoo Kim | Misclassification Penalized Posterior Classification |
| MLInterfaces | V. Carey | Uniform interfaces to R machine learning procedures for data in Bioconductor containers |
| NuPoP | Ji-Ping Wang | An R package for nucleosome positioning prediction |
| ontoCAT | Natalja Kurbatova | Ontology traversal and search |
| pamr | Rob Tibshirani | Pam: prediction analysis for microarrays |
| pdmclass | James W. MacDonald | Classification of Microarray Samples using Penalized Discriminant Methods |
| phenoTest | Evarist Planet | Tools to test correlation between gene expression and phenotype. |
| procoil | Ulrich Bodenhofer | Prediction of Oligomerization of Coiled Coil Proteins |
| RBioinf | Robert Gentleman | RBioinf |
| rHVDM | Martino Barenco | Hidden Variable Dynamic Modeling |
| Rmagpie | Camille Maumet | MicroArray Gene-expression-based Program In Error rate estimation |
| RTools4TB | Aurelie Bergon | Data mining of public microarray data through connections to the TranscriptomeBrowser database. |
| vbmp | Nicola Lama | Variational Bayesian Multinomial Probit Regression |