gene2pathway

Prediction of KEGG pathway membership for individual genes based on InterPro domain signatures

Bioconductor version: 2.5

The package takes a list of genes and predicts to which KEGG pathway each gene maps to. This is done by looking at the InterPro domains of each gene. Each prediction is assigned a confidence score. The package also allows to predict connected component membership of genes within signaling pathways. Separate models for each organism supported by KEGG can be trained.

Author: Holger Froehlich <h.froehlich at dkfz.de>, contributions by Tim Beissbarth <t.beissbarth at dkfz.de>

Maintainer: Holger Froehlich <h.froehlich at dkfz.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("gene2pathway")

To cite this package in a publication, start R and enter:

    citation("gene2pathway")

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