dyebias

The GASSCO method, for correcting for slide-depedent gene-specific dye bias

Bioconductor version: 2.5

Gene-specific dye-bias correction of two-color microarray data using the GASSCO method described in Margaritis et al. Mol. Sys. Biol. 5:266 (2009) doi:10.1038/msb.2009.21

Author: Philip Lijnzaad <p.lijnzaad at umcutrecht.nl> and Thanasis Margaritis <a.margaritis at umcutrecht.nl>

Maintainer: Philip Lijnzaad <p.lijnzaad at umcutrecht.nl>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("dyebias")

To cite this package in a publication, start R and enter:

    citation("dyebias")

Documentation

PDF	R Script	dye bias correction
PDF		dyebiasCompleteVignette.pdf
PDF		Reference Manual

Details

biocViews	Microarray, TwoChannel, QualityControl, Preprocessing
Depends	R (>= 1.4.1), marray, Biobase
Imports
Suggests	limma, convert, GEOquery, dyebiasexamples, methods
System Requirements
License	GPL-3
URL	http://www.holstegelab.nl/publications/margaritis_lijnzaad
Depends On Me
Imports Me
Suggests Me	dyebiasexamples
Version	1.4.3
Since	Bioconductor 2.4 (R-2.9)

Package Downloads

Package Source	dyebias_1.4.3.tar.gz
Windows Binary	dyebias_1.4.3.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	dyebias_1.4.3.tgz
Package Downloads Report	Download Stats

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