GenomicFeatures

Support package for genomic annotations

Bioconductor version: 2.5

Infrastructure shared by the annotation packages containing genomic features and tools for producing them.

Author: D. Sarkar, M. Lawrence, Biocore

Maintainer: Biocore Team c/o BioC user list <bioconductor at stat.math.ethz.ch>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("GenomicFeatures")

To cite this package in a publication, start R and enter:

    citation("GenomicFeatures")

PDF	R Script	Accessing Genome annotations from the UCSC Genome Browser
PDF		Reference Manual

biocViews	Genetics, Infrastructure
Depends	rtracklayer
Imports	methods, DBI, RSQLite, IRanges(>= 1.3.14), Biostrings(>= 2.13.54), BSgenome
Suggests	GenomicFeatures.Hsapiens.UCSC.hg18, BSgenome.Hsapiens.UCSC.hg18(>= 1.3.14)
System Requirements
License	Artistic-2.0
URL
Depends On Me	GenomicFeatures.Hsapiens.UCSC.hg18, GenomicFeatures.Mmusculus.UCSC.mm9
Imports Me	GenomicFeatures.Hsapiens.UCSC.hg18, GenomicFeatures.Mmusculus.UCSC.mm9
Suggests Me	Biostrings, chipseq, ind1KG
Version	0.2.0
Since	Bioconductor 2.5 (R-2.10)

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