| Package | Maintainer | Title |
|---|---|---|
| beadarraySNP | Jan Oosting | Normalization and reporting of Illumina SNP bead arrays |
| CNVtools | Chris Barnes | A package to test genetic association with CNV data |
| GGBase | Vince Carey | infrastructure for genetics of gene expression (c) 2008 VJ Carey |
| GGtools | Vince Carey | software and data for genetical genomics (c) 2006 VJ Carey |
| RLMM | Nusrat Rabbee | A Genotype Calling Algorithm for Affymetrix SNP Arrays |
| SNPchip | Robert Scharpf | Classes and Methods for high throughput SNP chip data |
| snpMatrix | David Clayton | The snp.matrix and X.snp.matrix classes |
| VanillaICE | Robert Scharpf | A Hidden Markov Model for high throughput genotyping arrays |