| Package | Maintainer | Title |
|---|---|---|
| affycoretools | James W. MacDonald | Functions useful for those doing repetitive analyses with Affymetrix GeneChips. |
| DEGseq | Likun Wang | Identify Differentially Expressed Genes from RNA-seq data |
| HTqPCR | Heidi Dvinge , Paul Bertone | Automated analysis of qPCR data |
| LiquidAssociation | Yen-Yi Ho | LiquidAssociation |
| oligo | Benilton Carvalho | Tools for low-level analysis of oligonucleotide arrays. |
| qpcrNorm | Jessica Mar | Data-driven normalization strategies for high-throughput qPCR data. |
| qpgraph | Robert Castelo | Reverse engineering of molecular regulatory networks with qp-graphs |
| RmiR | Francesco Favero | Package to work with miRNAs and miRNA targets with R |
| RPA | Leo Lahti | RPA: probe reliability and differential gene expression analysis |
| RTools4TB | Aurelie Bergon | Data mining of public microarray data through connections to the TranscriptomeBrowser database. |
| siggenes | Holger Schwender | Multiple testing using SAM and Efron's empirical Bayes approaches |
| xps | Christian Stratowa | Processing and Analysis of Affymetrix Oligonucleotide Arrays including Exon Arrays, Whole Genome Arrays and Plate Arrays |