snapCGH

Segmentation, normalisation and processing of aCGH data.

Methods for segmenting, normalising and processing aCGH data; including plotting functions for visualising raw and segmented data for individual and multiple arrays.

Author	Mike L. Smith, John C. Marioni, Steven McKinney, Thomas Hardcastle, Natalie P. Thorne
Maintainer	John Marioni

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("snapCGH")

Documentation

Segmentation Overview	PDF	R Script
Reference Manual

Details

biocViews	Microarray , DNACopyNumber , TwoChannel , Preprocessing
Depends	limma , tilingArray , DNAcopy , GLAD , cluster , methods , aCGH
Imports
Suggests
System Requirements
License	GPL
URL
Depends On Me
Imports Me
Suggests Me	beadarraySNP
Development History	Bioconductor Changelog

Package Downloads

Package source	snapCGH_1.12.0.tar.gz
Windows binary	snapCGH_1.12.0.zip
MacOS X 10.4 (Tiger) binary	snapCGH_1.12.0.tgz
MacOS X 10.5 (Leopard) binary	snapCGH_1.12.0.tgz
Package Downloads Report	Downloads Stats