safe

Significance Analysis of Function and Expression

SAFE is a resampling-based method for testing functional categories is gene expression experiments. SAFE can be applied to 2-sample and multi-class comparisons, or simple linear regressions. Other experimental designs can also be accommodated through user-defined functions.

Author	William T. Barry
Maintainer	William T. Barry

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("safe")

Documentation

SAFE manual	PDF	R Script
Reference Manual

Details

biocViews
Depends	R , Biobase , annotate , methods
Imports	SparseM , GO.db , annotate , AnnotationDbi , survival , Biobase
Suggests	GO.db , GOstats , Rgraphviz , multtest , hu6800.db , survival
System Requirements
License	GPL version 2 or newer
URL	http://www.duke.edu/~dinbarry/SAFE/
Depends On Me
Imports Me
Suggests Me
Development History	Bioconductor Changelog

Package Downloads

Package source	safe_2.4.0.tar.gz
Windows binary	safe_2.4.0.zip
MacOS X 10.4 (Tiger) binary	safe_2.4.0.tgz
MacOS X 10.5 (Leopard) binary	safe_2.4.0.tgz
Package Downloads Report	Downloads Stats