prada

Data analysis for cell-based functional assays

Tools for analysing and navigating data from high-throughput phenotyping experiments based on cellular assays and fluorescent detection (flow cytometry (FACS), high-content screening microscopy).

Author	Florian Hahne , Wolfgang Huber , Markus Ruschhaupt , Joern Toedling
Maintainer	Florian Hahne

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("prada")

Documentation

Removal of contaminants from FACS data	PDF	R Script
Combining prada output and cellHTS	PDF	R Script
Reference Manual

Details

biocViews	CellBasedAssays , Visualization
Depends	R , Biobase , RColorBrewer , grid , methods , rrcov
Imports	Biobase , graphics , grDevices , grid , MASS , methods , RColorBrewer , rrcov , utils
Suggests	cellHTS , rflowcyt , tcltk
System Requirements
License	LGPL
URL	http://www.dkfz.de/mga/whuber, http://www.dkfz.de/LIFEdb
Depends On Me	cellHTS , domainsignatures , rflowcyt , RNAither
Imports Me	cellHTS2 , rflowcyt
Suggests Me
Development History	Bioconductor Changelog

Package Downloads

Package source	prada_1.20.0.tar.gz
Windows binary	prada_1.20.0.zip
MacOS X 10.4 (Tiger) binary	prada_1.20.0.tgz
MacOS X 10.5 (Leopard) binary	prada_1.20.0.tgz
Package Downloads Report	Downloads Stats