beadarray

Quality assessment and low-level analysis for Illumina BeadArray data

The package is able to read bead-level data (raw TIFFs and text files) output by BeadScan as well as bead-summary data from BeadStudio. Methods for quality assessment and low-level analysis are provided.

Author	Mark Dunning, Mike Smith, Jonathan Cairns, Andy Lynch, Matt Ritchie
Maintainer	Mark Dunning

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("beadarray")

Documentation

BASH.pdf	PDF
beadarray Vignette	PDF	R Script
beadlevel.pdf	PDF
beadsummary.pdf	PDF	R Script
Reference Manual

Details

biocViews	Microarray , OneChannel , QualityControl , Preprocessing
Depends	Biobase , methods , hwriter
Imports	limma
Suggests	lumi , vsn , affy
System Requirements
License	GPL
URL
Depends On Me
Imports Me	arrayQualityMetrics
Suggests Me	beadarraySNP , lumi
Development History	Bioconductor Changelog

Package Downloads

Package source	beadarray_1.12.1.tar.gz
Windows binary	beadarray_1.12.1.zip
MacOS X 10.4 (Tiger) binary	beadarray_1.12.1.tgz
MacOS X 10.5 (Leopard) binary	beadarray_1.12.1.tgz
Package Downloads Report	Downloads Stats