RpsiXML

R interface to PSI-MI 2.5 files

Queries, data structure and interface to visualization of interaction datasets. This package inplements the PSI-MI 2.5 standard and supports up to now 8 databases. Further databases supporting PSI-MI 2.5 standard will be added continuously.

Author	Jitao David Zhang , Stefan Wiemann , Marc Carlson , with contributions from Tony Chiang
Maintainer	Jitao David Zhang

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("RpsiXML")

Documentation

Reading PSI-25 XML files	PDF	R Script
Application Examples of RpsiXML package	PDF	R Script
Reference Manual

Details

biocViews	Infrastructure , Proteomics
Depends	annotate , graph , Biobase , RBGL , methods , hypergraph
Imports	Biobase , annotate , graph , RBGL , XML
Suggests	org.Hs.eg.db , org.Mm.eg.db , org.Dm.eg.db , org.Rn.eg.db , org.Sc.sgd.db , hom.Hs.inp.db , hom.Mm.inp.db , hom.Dm.inp.db , hom.Rn.inp.db , hom.Sc.inp.db , Rgraphviz , ppiStats
System Requirements
License	LGPL-3
URL	http://www.bioconductor.org
Depends On Me	ScISI
Imports Me	ScISI
Suggests Me
Development History	Bioconductor Changelog

Package Downloads

Package source	RpsiXML_1.4.1.tar.gz
Windows binary	RpsiXML_1.4.1.zip
MacOS X 10.4 (Tiger) binary	RpsiXML_1.4.1.tgz
MacOS X 10.5 (Leopard) binary	RpsiXML_1.4.1.tgz
Package Downloads Report	Downloads Stats