To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DSS")
In most cases, you don't need to download the package archive at all.
DSS
|
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, see DSS.
Dispersion shrinakge for sequencing data.
Bioconductor version: 2.12
DSS is an R library performing the differential expression analysis for RNA-seq count data. DSS implements a new dispersion shrinkage method to estimate the gene-specific biological variance. Extensive simulation results showed that DSS performs favorabily compared to DESeq and edgeR when the variation of biological variances is large.
Author: Hao Wu <hao.wu at emory.edu>
Maintainer: Hao Wu <hao.wu at emory.edu>
Citation (from within R,
enter citation("DSS")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DSS")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DSS")
| R Script | Differential expression for RNA-seq data with dispersion shrinkage | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | ChIPseq, DifferentialExpression, HighThroughputSequencing, RNAseq, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (3.5 years) |
| License | GPL |
| Depends | Biobase, locfdr |
| Imports | methods |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | DSS_1.4.0.tar.gz |
| Windows Binary | DSS_1.4.0.zip |
| Mac OS X 10.6 (Snow Leopard) | DSS_1.4.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/DSS/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/DSS/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
