%\VignetteIndexEntry{Plotting Idiograms}
%\VignetteKeywords{copy number, SNP}
%\VignettePackage{SNPchip}
\documentclass{article}
\usepackage{graphicx}
\usepackage[utf8]{inputenc}
\usepackage[T1]{fontenc}
\usepackage{natbib}
\usepackage{url}
\usepackage{amsmath}
\usepackage{amssymb}
\newcommand{\Rfunction}[1]{{\texttt{#1}}}
\newcommand{\Rmethod}[1]{{\texttt{#1}}}
\newcommand{\Rcode}[1]{{\texttt{#1}}}
\newcommand{\Robject}[1]{{\texttt{#1}}}
\newcommand{\Rpackage}[1]{{\textsf{#1}}}
\newcommand{\Rclass}[1]{{\textit{#1}}}
\newcommand{\R}{\textsf{R}}
\usepackage[margin=1in]{geometry}


\title{Plotting Idiograms}
\date{\today}

\author{Rob Scharpf}

\begin{document}
\maketitle

\section{Simple Usage}

<<packages, results=hide>>=
library(SNPchip)
@

Plot an idiogram for chromosome 1.

<<label=chr1, fig=TRUE, include=TRUE, width=12, height=2, results=hide>>=
plotIdiogram("1", cex=0.8)
@

\end{document}