Rsubread

This package is for version 2.10 of Bioconductor; for the stable, up-to-date release version, see Rsubread.

Rsubread: a super fast, sensitive and accurate read aligner for mapping next-generation sequencing reads

Bioconductor version: 2.10

This package performs read mapping, exon junction detection and other tasks for next-generation sequencing data. The read mapping function implements a novel mapping paradigm, which is entirely different from the "seed-and-extent" paradigm. It can be used to map both short reads and long reads (>200bp) and reads of variable lengths. It also provides functions to summarize read counts to genes or exons and gives detection p values for each gene in the RNA-seq data.

Author: Wei Shi, Yang Liao and Jenny Zhiyin Dai

Maintainer: Wei Shi <shi at wehi.edu.au>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rsubread")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rsubread")

Details

Package Archives

Follow Installation instructions to use this package in your R session.