############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data puma ### ############################################################################## ############################################################################## * checking for file ‘puma/DESCRIPTION’ ... OK * preparing ‘puma’: * checking DESCRIPTION meta-information ... OK * cleaning src * installing the package to build vignettes ----------------------------------- * installing *source* package ‘puma’ ... ** using staged installation ** libs using C compiler: ‘gcc (Ubuntu 13.2.0-23ubuntu4) 13.2.0’ gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c PMmultimgmos.c -o PMmultimgmos.o PMmultimgmos.c: In function ‘freemem_mmgmospm’: PMmultimgmos.c:138:53: warning: implicit declaration of function ‘Free’; did you mean ‘free’? [-Wimplicit-function-declaration] 138 | if (in_param.parameters[j] != NULL) Free(in_param.parameters[j]); | ^~~~ | free In file included from PMmultimgmos.c:149: o8comm.h: In function ‘pmcalparameters’: o8comm.h:60:15: warning: unused variable ‘xst’ [-Wunused-variable] 60 | X DDOUBLE *xst; | ^~~ o8comm.h:58:14: warning: unused variable ‘nreset’ [-Wunused-variable] 58 | X IINTEGER nreset; | ^~~~~~ o8comm.h:56:23: warning: unused variable ‘big’ [-Wunused-variable] 56 | X DDOUBLE *low,*up,big; | ^~~ o8comm.h:56:20: warning: unused variable ‘up’ [-Wunused-variable] 56 | X DDOUBLE *low,*up,big; | ^~ o8comm.h:56:15: warning: unused variable ‘low’ [-Wunused-variable] 56 | X DDOUBLE *low,*up,big; | ^~~ o8comm.h:54:19: warning: unused variable ‘og’ [-Wunused-variable] 54 | X DDOUBLE *ug,*og; | ^~ o8comm.h:54:15: warning: unused variable ‘ug’ [-Wunused-variable] 54 | X DDOUBLE *ug,*og; | ^~ o8comm.h:52:20: warning: unused variable ‘meu’ [-Wunused-variable] 52 | X FILE *prou,*meu; | ^~~ o8comm.h:52:14: warning: unused variable ‘prou’ [-Wunused-variable] 52 | X FILE *prou,*meu; | ^~~~ o8comm.h:50:33: warning: unused variable ‘lastch’ [-Wunused-variable] 50 | X IINTEGER clow,lastdw,lastup,lastch; | ^~~~~~ o8comm.h:50:26: warning: unused variable ‘lastup’ [-Wunused-variable] 50 | X IINTEGER clow,lastdw,lastup,lastch; | ^~~~~~ o8comm.h:50:19: warning: unused variable ‘lastdw’ [-Wunused-variable] 50 | X IINTEGER clow,lastdw,lastup,lastch; | ^~~~~~ o8comm.h:50:14: warning: unused variable ‘clow’ [-Wunused-variable] 50 | X IINTEGER clow,lastdw,lastup,lastch; | ^~~~ o8comm.h:49:14: warning: unused variable ‘level’ [-Wunused-variable] 49 | X DDOUBLE level; | ^~~~~ o8comm.h:47:21: warning: unused variable ‘stmaxl’ [-Wunused-variable] 47 | X DDOUBLE delta1,stmaxl; | ^~~~~~ o8comm.h:47:14: warning: unused variable ‘delta1’ [-Wunused-variable] 47 | X DDOUBLE delta1,stmaxl; | ^~~~~~ o8comm.h:46:50: warning: unused variable ‘stptrm’ [-Wunused-variable] 46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm; | ^~~~~~ o8comm.h:46:44: warning: unused variable ‘delta’ [-Wunused-variable] 46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm; | ^~~~~ o8comm.h:46:38: warning: unused variable ‘sigla’ [-Wunused-variable] 46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm; | ^~~~~ o8comm.h:46:32: warning: unused variable ‘sigsm’ [-Wunused-variable] 46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm; | ^~~~~ o8comm.h:46:26: warning: unused variable ‘theta’ [-Wunused-variable] 46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm; | ^~~~~ o8comm.h:46:20: warning: unused variable ‘bbeta’ [-Wunused-variable] 46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm; | ^~~~~ o8comm.h:46:14: warning: unused variable ‘alpha’ [-Wunused-variable] 46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm; | ^~~~~ o8comm.h:44:40: warning: unused variable ‘taumax’ [-Wunused-variable] 44 | scfmax,updmy0,tauqp,taufac,taumax; | ^~~~~~ o8comm.h:44:33: warning: unused variable ‘taufac’ [-Wunused-variable] 44 | scfmax,updmy0,tauqp,taufac,taumax; | ^~~~~~ o8comm.h:44:27: warning: unused variable ‘tauqp’ [-Wunused-variable] 44 | scfmax,updmy0,tauqp,taufac,taumax; | ^~~~~ o8comm.h:44:20: warning: unused variable ‘updmy0’ [-Wunused-variable] 44 | scfmax,updmy0,tauqp,taufac,taumax; | ^~~~~~ o8comm.h:44:13: warning: unused variable ‘scfmax’ [-Wunused-variable] 44 | scfmax,updmy0,tauqp,taufac,taumax; | ^~~~~~ o8comm.h:43:46: warning: unused variable ‘c1d’ [-Wunused-variable] 43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d, | ^~~ o8comm.h:43:41: warning: unused variable ‘epsx’ [-Wunused-variable] 43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d, | ^~~~ o8comm.h:43:37: warning: unused variable ‘eta’ [-Wunused-variable] 43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d, | ^~~ o8comm.h:43:32: warning: unused variable ‘rho1’ [-Wunused-variable] 43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d, | ^~~~ o8comm.h:43:28: warning: unused variable ‘rho’ [-Wunused-variable] 43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d, | ^~~ o8comm.h:43:21: warning: unused variable ‘smallw’ [-Wunused-variable] 43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d, | ^~~~~~ o8comm.h:43:14: warning: unused variable ‘smalld’ [-Wunused-variable] 43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d, | ^~~~~~ o8comm.h:42:45: warning: unused variable ‘ny’ [-Wunused-variable] 42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny; | ^~ o8comm.h:42:41: warning: unused variable ‘tau’ [-Wunused-variable] 42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny; | ^~~ o8comm.h:42:36: warning: unused variable ‘tau0’ [-Wunused-variable] 42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny; | ^~~~ o8comm.h:42:29: warning: unused variable ‘delmin’ [-Wunused-variable] 42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny; | ^~~~~~ o8comm.h:42:23: warning: unused variable ‘del01’ [-Wunused-variable] 42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny; | ^~~~~ o8comm.h:42:18: warning: unused variable ‘del0’ [-Wunused-variable] 42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny; | ^~~~ o8comm.h:42:14: warning: unused variable ‘del’ [-Wunused-variable] 42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny; | ^~~ o8comm.h:41:14: warning: unused variable ‘iterma’ [-Wunused-variable] 41 | X IINTEGER iterma; | ^~~~~~ o8comm.h:39:32: warning: unused variable ‘work’ [-Wunused-variable] 39 | *yu,*slack,infeas,*work; | ^~~~ o8comm.h:39:24: warning: unused variable ‘infeas’ [-Wunused-variable] 39 | *yu,*slack,infeas,*work; | ^~~~~~ o8comm.h:39:18: warning: unused variable ‘slack’ [-Wunused-variable] 39 | *yu,*slack,infeas,*work; | ^~~~~ o8comm.h:39:14: warning: unused variable ‘yu’ [-Wunused-variable] 39 | *yu,*slack,infeas,*work; | ^~ o8comm.h:38:24: warning: unused variable ‘scf0’ [-Wunused-variable] 38 | *resst,scf,scf0, | ^~~~ o8comm.h:38:20: warning: unused variable ‘scf’ [-Wunused-variable] 38 | *resst,scf,scf0, | ^~~ o8comm.h:38:14: warning: unused variable ‘resst’ [-Wunused-variable] 38 | *resst,scf,scf0, | ^~~~~ o8comm.h:37:20: warning: unused variable ‘res1’ [-Wunused-variable] 37 | *res0,*res1, | ^~~~ o8comm.h:37:14: warning: unused variable ‘res0’ [-Wunused-variable] 37 | *res0,*res1, | ^~~~ o8comm.h:36:21: warning: unused variable ‘res’ [-Wunused-variable] 36 | *w,*w1,*res, | ^~~ o8comm.h:36:17: warning: unused variable ‘w1’ [-Wunused-variable] 36 | *w,*w1,*res, | ^~ o8comm.h:36:14: warning: unused variable ‘w’ [-Wunused-variable] 36 | *w,*w1,*res, | ^ o8comm.h:35:18: warning: unused variable ‘u0’ [-Wunused-variable] 35 | X DDOUBLE *u,*u0, | ^~ o8comm.h:35:15: warning: unused variable ‘u’ [-Wunused-variable] 35 | X DDOUBLE *u,*u0, | ^ o8comm.h:33:32: warning: unused variable ‘clist’ [-Wunused-variable] 33 | *o8bind0, *aalist,*clist; | ^~~~~ o8comm.h:33:24: warning: unused variable ‘aalist’ [-Wunused-variable] 33 | *o8bind0, *aalist,*clist; | ^~~~~~ o8comm.h:33:14: warning: unused variable ‘o8bind0’ [-Wunused-variable] 33 | *o8bind0, *aalist,*clist; | ^~~~~~~ o8comm.h:32:30: warning: unused variable ‘o8bind’ [-Wunused-variable] 32 | X IINTEGER *violis,*alist,*o8bind, | ^~~~~~ o8comm.h:32:23: warning: unused variable ‘alist’ [-Wunused-variable] 32 | X IINTEGER *violis,*alist,*o8bind, | ^~~~~ o8comm.h:32:15: warning: unused variable ‘violis’ [-Wunused-variable] 32 | X IINTEGER *violis,*alist,*o8bind, | ^~~~~~ o8comm.h:30:38: warning: unused variable ‘matsc’ [-Wunused-variable] 30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc; | ^~~~~ o8comm.h:30:32: warning: unused variable ‘diag0’ [-Wunused-variable] 30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc; | ^~~~~ o8comm.h:30:24: warning: unused variable ‘scalm2’ [-Wunused-variable] 30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc; | ^~~~~~ o8comm.h:30:18: warning: unused variable ‘scalm’ [-Wunused-variable] 30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc; | ^~~~~ o8comm.h:30:16: warning: unused variable ‘a’ [-Wunused-variable] 30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc; | ^ o8comm.h:26:14: warning: unused variable ‘colle’ [-Wunused-variable] 26 | *colle; | ^~~~~ o8comm.h:25:14: warning: unused variable ‘cscal’ [-Wunused-variable] 25 | *cscal, | ^~~~~ o8comm.h:24:27: warning: unused variable ‘diag’ [-Wunused-variable] 24 | X DDOUBLE **qr,*betaq,*diag, | ^~~~ o8comm.h:24:20: warning: unused variable ‘betaq’ [-Wunused-variable] 24 | X DDOUBLE **qr,*betaq,*diag, | ^~~~~ o8comm.h:24:16: warning: unused variable ‘qr’ [-Wunused-variable] 24 | X DDOUBLE **qr,*betaq,*diag, | ^~ o8comm.h:23:34: warning: unused variable ‘rank’ [-Wunused-variable] 23 | X IINTEGER *perm,*perm1,*colno,rank; | ^~~~ o8comm.h:23:28: warning: unused variable ‘colno’ [-Wunused-variable] 23 | X IINTEGER *perm,*perm1,*colno,rank; | ^~~~~ o8comm.h:23:21: warning: unused variable ‘perm1’ [-Wunused-variable] 23 | X IINTEGER *perm,*perm1,*colno,rank; | ^~~~~ o8comm.h:23:15: warning: unused variable ‘perm’ [-Wunused-variable] 23 | X IINTEGER *perm,*perm1,*colno,rank; | ^~~~ o8comm.h:21:21: warning: unused variable ‘gresn’ [-Wunused-variable] 21 | **gres,*gresn; | ^~~~~ o8comm.h:21:15: warning: unused variable ‘gres’ [-Wunused-variable] 21 | **gres,*gresn; | ^~~~ o8comm.h:20:38: warning: unused variable ‘gphi1’ [-Wunused-variable] 20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1, | ^~~~~ o8comm.h:20:31: warning: unused variable ‘gphi0’ [-Wunused-variable] 20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1, | ^~~~~ o8comm.h:20:26: warning: unused variable ‘qgf’ [-Wunused-variable] 20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1, | ^~~ o8comm.h:20:21: warning: unused variable ‘gfn’ [-Wunused-variable] 20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1, | ^~~ o8comm.h:20:15: warning: unused variable ‘gradf’ [-Wunused-variable] 20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1, | ^~~~~ o8comm.h:18:24: warning: unused variable ‘resmin’ [-Wunused-variable] 18 | *dd,*difx,*resmin; | ^~~~~~ o8comm.h:18:18: warning: unused variable ‘difx’ [-Wunused-variable] 18 | *dd,*difx,*resmin; | ^~~~ o8comm.h:18:14: warning: unused variable ‘dd’ [-Wunused-variable] 18 | *dd,*difx,*resmin; | ^~ o8comm.h:17:42: warning: unused variable ‘d0’ [-Wunused-variable] 17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0, | ^~ o8comm.h:17:39: warning: unused variable ‘d’ [-Wunused-variable] 17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0, | ^ o8comm.h:17:33: warning: unused variable ‘xmin’ [-Wunused-variable] 17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0, | ^~~~ o8comm.h:17:29: warning: unused variable ‘x1’ [-Wunused-variable] 17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0, | ^~ o8comm.h:17:25: warning: unused variable ‘x0’ [-Wunused-variable] 17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0, | ^~ o8comm.h:17:15: warning: unused variable ‘donlp2_x’ [-Wunused-variable] 17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0, | ^~~~~~~~ o8comm.h:16:39: warning: unused variable ‘upsim’ [-Wunused-variable] 16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim; | ^~~~~ o8comm.h:16:32: warning: unused variable ‘cosphi’ [-Wunused-variable] 16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim; | ^~~~~~ o8comm.h:16:25: warning: unused variable ‘dirder’ [-Wunused-variable] 16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim; | ^~~~~~ o8comm.h:16:18: warning: unused variable ‘sigmin’ [-Wunused-variable] 16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim; | ^~~~~~ o8comm.h:16:14: warning: unused variable ‘sig’ [-Wunused-variable] 16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim; | ^~~ o8comm.h:15:70: warning: unused variable ‘d0norm’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~~~ o8comm.h:15:63: warning: unused variable ‘ddnorm’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~~~ o8comm.h:15:57: warning: unused variable ‘dscal’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~~ o8comm.h:15:52: warning: unused variable ‘sig0’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~ o8comm.h:15:45: warning: unused variable ‘x0norm’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~~~ o8comm.h:15:39: warning: unused variable ‘xnorm’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~~ o8comm.h:15:34: warning: unused variable ‘b2n0’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~ o8comm.h:15:30: warning: unused variable ‘b2n’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~ o8comm.h:15:18: warning: unused variable ‘donlp2_fmin’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~~~~~~~~ o8comm.h:15:13: warning: unused variable ‘fxst’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~ o8comm.h:14:41: warning: unused variable ‘fx1’ [-Wunused-variable] 14 | phi,phi0,phi1,phimin,fx,fx0,fx1, | ^~~ o8comm.h:14:37: warning: unused variable ‘fx0’ [-Wunused-variable] 14 | phi,phi0,phi1,phimin,fx,fx0,fx1, | ^~~ o8comm.h:14:27: warning: unused variable ‘phimin’ [-Wunused-variable] 14 | phi,phi0,phi1,phimin,fx,fx0,fx1, | ^~~~~~ o8comm.h:14:22: warning: unused variable ‘phi1’ [-Wunused-variable] 14 | phi,phi0,phi1,phimin,fx,fx0,fx1, | ^~~~ o8comm.h:14:17: warning: unused variable ‘phi0’ [-Wunused-variable] 14 | phi,phi0,phi1,phimin,fx,fx0,fx1, | ^~~~ o8comm.h:14:13: warning: unused variable ‘phi’ [-Wunused-variable] 14 | phi,phi0,phi1,phimin,fx,fx0,fx1, | ^~~ o8comm.h:13:24: warning: unused variable ‘psimin’ [-Wunused-variable] 13 | psi1,psist,psimin, | ^~~~~~ o8comm.h:13:18: warning: unused variable ‘psist’ [-Wunused-variable] 13 | psi1,psist,psimin, | ^~~~~ o8comm.h:13:13: warning: unused variable ‘psi1’ [-Wunused-variable] 13 | psi1,psist,psimin, | ^~~~ o8comm.h:12:42: warning: unused variable ‘psi0’ [-Wunused-variable] 12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0, | ^~~~ o8comm.h:12:38: warning: unused variable ‘psi’ [-Wunused-variable] 12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0, | ^~~ o8comm.h:12:31: warning: unused variable ‘upsist’ [-Wunused-variable] 12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0, | ^~~~~~ o8comm.h:12:25: warning: unused variable ‘upsi1’ [-Wunused-variable] 12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0, | ^~~~~ o8comm.h:12:19: warning: unused variable ‘upsi0’ [-Wunused-variable] 12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0, | ^~~~~ o8comm.h:12:14: warning: unused variable ‘upsi’ [-Wunused-variable] 12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0, | ^~~~ o8comm.h:10:21: warning: unused variable ‘phase’ [-Wunused-variable] 10 | X IINTEGER itstep,phase; | ^~~~~ o8comm.h:10:14: warning: unused variable ‘itstep’ [-Wunused-variable] 10 | X IINTEGER itstep,phase; | ^~~~~~ o8comm.h:9:16: warning: unused variable ‘accinf’ [-Wunused-variable] 9 | X DDOUBLE **accinf; | ^~~~~~ o8comm.h:8:14: warning: unused variable ‘optite’ [-Wunused-variable] 8 | X RREAL optite; | ^~~~~~ o8comm.h:7:14: warning: unused variable ‘runtim’ [-Wunused-variable] 7 | X RREAL runtim; | ^~~~~~ In file included from o8comm.h:5: o8fuco.h:33:13: warning: unused variable ‘cfuerr’ [-Wunused-variable] 33 | X LLOGICAL *cfuerr; | ^~~~~~ o8fuco.h:31:13: warning: unused variable ‘gconst’ [-Wunused-variable] 31 | X LLOGICAL *gconst; | ^~~~~~ o8fuco.h:29:14: warning: unused variable ‘gunit’ [-Wunused-variable] 29 | X IINTEGER **gunit; | ^~~~~ o8fuco.h:27:13: warning: unused variable ‘nonlinlist’ [-Wunused-variable] 27 | X IINTEGER *nonlinlist; | ^~~~~~~~~~ o8fuco.h:25:15: warning: unused variable ‘ng’ [-Wunused-variable] 25 | X IINTEGER nh,ng; | ^~ o8fuco.h:25:12: warning: unused variable ‘nh’ [-Wunused-variable] 25 | X IINTEGER nh,ng; | ^~ o8fuco.h:20:22: warning: unused variable ‘confuerr’ [-Wunused-variable] 20 | X LLOGICAL ffuerr,*confuerr; | ^~~~~~~~ o8fuco.h:20:14: warning: unused variable ‘ffuerr’ [-Wunused-variable] 20 | X LLOGICAL ffuerr,*confuerr; | ^~~~~~ o8fuco.h:18:37: warning: unused variable ‘cgres’ [-Wunused-variable] 18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres; | ^~~~~ o8fuco.h:18:31: warning: unused variable ‘cres’ [-Wunused-variable] 18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres; | ^~~~ o8fuco.h:18:23: warning: unused variable ‘cfincr’ [-Wunused-variable] 18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres; | ^~~~~~ o8fuco.h:18:18: warning: unused variable ‘icgf’ [-Wunused-variable] 18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres; | ^~~~ o8fuco.h:18:14: warning: unused variable ‘icf’ [-Wunused-variable] 18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres; | ^~~ o8fuco.h:16:40: warning: unused variable ‘cold’ [-Wunused-variable] 16 | X LLOGICAL ident,eqres,silent,analyt,cold; | ^~~~ o8fuco.h:16:33: warning: unused variable ‘analyt’ [-Wunused-variable] 16 | X LLOGICAL ident,eqres,silent,analyt,cold; | ^~~~~~ o8fuco.h:16:26: warning: unused variable ‘silent’ [-Wunused-variable] 16 | X LLOGICAL ident,eqres,silent,analyt,cold; | ^~~~~~ o8fuco.h:16:20: warning: unused variable ‘eqres’ [-Wunused-variable] 16 | X LLOGICAL ident,eqres,silent,analyt,cold; | ^~~~~ o8fuco.h:16:14: warning: unused variable ‘ident’ [-Wunused-variable] 16 | X LLOGICAL ident,eqres,silent,analyt,cold; | ^~~~~ o8fuco.h:15:37: warning: unused variable ‘singul’ [-Wunused-variable] 15 | X LLOGICAL intakt,te0,te1,te2,te3,singul; | ^~~~~~ o8fuco.h:15:33: warning: unused variable ‘te3’ [-Wunused-variable] 15 | X LLOGICAL intakt,te0,te1,te2,te3,singul; | ^~~ o8fuco.h:15:29: warning: unused variable ‘te2’ [-Wunused-variable] 15 | X LLOGICAL intakt,te0,te1,te2,te3,singul; | ^~~ o8fuco.h:15:25: warning: unused variable ‘te1’ [-Wunused-variable] 15 | X LLOGICAL intakt,te0,te1,te2,te3,singul; | ^~~ o8fuco.h:15:21: warning: unused variable ‘te0’ [-Wunused-variable] 15 | X LLOGICAL intakt,te0,te1,te2,te3,singul; | ^~~ o8fuco.h:15:14: warning: unused variable ‘intakt’ [-Wunused-variable] 15 | X LLOGICAL intakt,te0,te1,te2,te3,singul; | ^~~~~~ o8fuco.h:13:14: warning: unused variable ‘epsdif’ [-Wunused-variable] 13 | X DDOUBLE epsdif; | ^~~~~~ o8fuco.h:11:13: warning: unused variable ‘name’ [-Wunused-variable] 11 | X char name[41]; | ^~~~ o8fuco.h:9:28: warning: unused variable ‘deldif’ [-Wunused-variable] 9 | X DDOUBLE epsmac,tolmac,deldif; | ^~~~~~ o8fuco.h:9:21: warning: unused variable ‘tolmac’ [-Wunused-variable] 9 | X DDOUBLE epsmac,tolmac,deldif; | ^~~~~~ o8fuco.h:9:14: warning: unused variable ‘epsmac’ [-Wunused-variable] 9 | X DDOUBLE epsmac,tolmac,deldif; | ^~~~~~ o8fuco.h:7:52: warning: unused variable ‘mdualm’ [-Wunused-variable] 7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm; | ^~~~~~ o8fuco.h:7:44: warning: unused variable ‘ndualm’ [-Wunused-variable] 7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm; | ^~~~~~ o8fuco.h:7:37: warning: unused variable ‘nstep’ [-Wunused-variable] 7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm; | ^~~~~ o8fuco.h:7:29: warning: unused variable ‘nonlin’ [-Wunused-variable] 7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm; | ^~~~~~ o8fuco.h:7:24: warning: unused variable ‘nlin’ [-Wunused-variable] 7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm; | ^~~~ o8fuco.h:7:19: warning: unused variable ‘nres’ [-Wunused-variable] 7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm; | ^~~~ o8fuco.h:7:16: warning: unused variable ‘nr’ [-Wunused-variable] 7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm; | ^~ o8fuco.h:7:14: warning: unused variable ‘n’ [-Wunused-variable] 7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm; | ^ o8fuco.h:5:26: warning: unused variable ‘lup’ [-Wunused-variable] 5 | X LLOGICAL *val,*llow,*lup; | ^~~ o8fuco.h:5:20: warning: unused variable ‘llow’ [-Wunused-variable] 5 | X LLOGICAL *val,*llow,*lup; | ^~~~ o8fuco.h:5:15: warning: unused variable ‘val’ [-Wunused-variable] 5 | X LLOGICAL *val,*llow,*lup; | ^~~ gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c cregistration.c -o cregistration.o gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c donlp2.c -o donlp2.o donlp2.c: In function ‘o8st’: donlp2.c:471:33: warning: variable ‘infiny’ set but not used [-Wunused-but-set-variable] 471 | static DDOUBLE tol1,term, infiny; | ^~~~~~ donlp2.c: At top level: donlp2.c:2034:1: warning: "/*" within comment [-Wcomment] 2034 | /* **************************************************************************** */ | donlp2.c: In function ‘o8opti’: donlp2.c:2707:1: warning: "/*" within comment [-Wcomment] 2707 | /* inactive | donlp2.c:2079:44: warning: variable ‘iumin’ set but not used [-Wunused-but-set-variable] 2079 | static DDOUBLE delsig,delx,sum,term, iumin; | ^~~~~ gcc -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/usr/local/include -DSTRICT_R_HEADERS=1 -fpic -g -O2 -Wall -c gme.c -o gme.o gme.c: In function ‘gme_expparam_free’: gme.c:28:9: warning: implicit declaration of function ‘Free’; did you mean ‘free’? [-Wimplicit-function-declaration] 28 | Free(in_param); | ^~~~ | free gme.c: In function ‘allocate_matrix’: gme.c:246:22: warning: implicit declaration of function ‘Calloc’; did you mean ‘calloc’? [-Wimplicit-function-declaration] 246 | c=(double **)Calloc(m,double); | ^~~~~~ | calloc gme.c:246:31: error: expected expression before ‘double’ 246 | c=(double **)Calloc(m,double); | ^~~~~~ gme.c:248:39: error: expected expression before ‘double’ 248 | c[i]=(double *)Calloc(n,double); | ^~~~~~ gme.c: In function ‘gme_calparameters’: gme.c:266:16: warning: variable ‘fstart’ set but not used [-Wunused-but-set-variable] 266 | double fstart; | ^~~~~~ In file included from gme.c:577: o8comm.h: In function ‘user_init_size_gme’: o8comm.h:60:15: warning: unused variable ‘xst’ [-Wunused-variable] 60 | X DDOUBLE *xst; | ^~~ o8comm.h:58:14: warning: unused variable ‘nreset’ [-Wunused-variable] 58 | X IINTEGER nreset; | ^~~~~~ o8comm.h:56:23: warning: unused variable ‘big’ [-Wunused-variable] 56 | X DDOUBLE *low,*up,big; | ^~~ o8comm.h:56:20: warning: unused variable ‘up’ [-Wunused-variable] 56 | X DDOUBLE *low,*up,big; | ^~ o8comm.h:56:15: warning: unused variable ‘low’ [-Wunused-variable] 56 | X DDOUBLE *low,*up,big; | ^~~ o8comm.h:54:19: warning: unused variable ‘og’ [-Wunused-variable] 54 | X DDOUBLE *ug,*og; | ^~ o8comm.h:54:15: warning: unused variable ‘ug’ [-Wunused-variable] 54 | X DDOUBLE *ug,*og; | ^~ o8comm.h:52:20: warning: unused variable ‘meu’ [-Wunused-variable] 52 | X FILE *prou,*meu; | ^~~ o8comm.h:52:14: warning: unused variable ‘prou’ [-Wunused-variable] 52 | X FILE *prou,*meu; | ^~~~ o8comm.h:50:33: warning: unused variable ‘lastch’ [-Wunused-variable] 50 | X IINTEGER clow,lastdw,lastup,lastch; | ^~~~~~ o8comm.h:50:26: warning: unused variable ‘lastup’ [-Wunused-variable] 50 | X IINTEGER clow,lastdw,lastup,lastch; | ^~~~~~ o8comm.h:50:19: warning: unused variable ‘lastdw’ [-Wunused-variable] 50 | X IINTEGER clow,lastdw,lastup,lastch; | ^~~~~~ o8comm.h:50:14: warning: unused variable ‘clow’ [-Wunused-variable] 50 | X IINTEGER clow,lastdw,lastup,lastch; | ^~~~ o8comm.h:49:14: warning: unused variable ‘level’ [-Wunused-variable] 49 | X DDOUBLE level; | ^~~~~ o8comm.h:47:21: warning: unused variable ‘stmaxl’ [-Wunused-variable] 47 | X DDOUBLE delta1,stmaxl; | ^~~~~~ o8comm.h:47:14: warning: unused variable ‘delta1’ [-Wunused-variable] 47 | X DDOUBLE delta1,stmaxl; | ^~~~~~ o8comm.h:46:50: warning: unused variable ‘stptrm’ [-Wunused-variable] 46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm; | ^~~~~~ o8comm.h:46:44: warning: unused variable ‘delta’ [-Wunused-variable] 46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm; | ^~~~~ o8comm.h:46:38: warning: unused variable ‘sigla’ [-Wunused-variable] 46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm; | ^~~~~ o8comm.h:46:32: warning: unused variable ‘sigsm’ [-Wunused-variable] 46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm; | ^~~~~ o8comm.h:46:26: warning: unused variable ‘theta’ [-Wunused-variable] 46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm; | ^~~~~ o8comm.h:46:20: warning: unused variable ‘bbeta’ [-Wunused-variable] 46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm; | ^~~~~ o8comm.h:46:14: warning: unused variable ‘alpha’ [-Wunused-variable] 46 | X DDOUBLE alpha,bbeta,theta,sigsm,sigla,delta,stptrm; | ^~~~~ o8comm.h:44:40: warning: unused variable ‘taumax’ [-Wunused-variable] 44 | scfmax,updmy0,tauqp,taufac,taumax; | ^~~~~~ o8comm.h:44:33: warning: unused variable ‘taufac’ [-Wunused-variable] 44 | scfmax,updmy0,tauqp,taufac,taumax; | ^~~~~~ o8comm.h:44:27: warning: unused variable ‘tauqp’ [-Wunused-variable] 44 | scfmax,updmy0,tauqp,taufac,taumax; | ^~~~~ o8comm.h:44:20: warning: unused variable ‘updmy0’ [-Wunused-variable] 44 | scfmax,updmy0,tauqp,taufac,taumax; | ^~~~~~ o8comm.h:44:13: warning: unused variable ‘scfmax’ [-Wunused-variable] 44 | scfmax,updmy0,tauqp,taufac,taumax; | ^~~~~~ o8comm.h:43:46: warning: unused variable ‘c1d’ [-Wunused-variable] 43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d, | ^~~ o8comm.h:43:41: warning: unused variable ‘epsx’ [-Wunused-variable] 43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d, | ^~~~ o8comm.h:43:37: warning: unused variable ‘eta’ [-Wunused-variable] 43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d, | ^~~ o8comm.h:43:32: warning: unused variable ‘rho1’ [-Wunused-variable] 43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d, | ^~~~ o8comm.h:43:28: warning: unused variable ‘rho’ [-Wunused-variable] 43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d, | ^~~ o8comm.h:43:21: warning: unused variable ‘smallw’ [-Wunused-variable] 43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d, | ^~~~~~ o8comm.h:43:14: warning: unused variable ‘smalld’ [-Wunused-variable] 43 | X DDOUBLE smalld,smallw,rho,rho1,eta,epsx,c1d, | ^~~~~~ o8comm.h:42:45: warning: unused variable ‘ny’ [-Wunused-variable] 42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny; | ^~ o8comm.h:42:41: warning: unused variable ‘tau’ [-Wunused-variable] 42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny; | ^~~ o8comm.h:42:36: warning: unused variable ‘tau0’ [-Wunused-variable] 42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny; | ^~~~ o8comm.h:42:29: warning: unused variable ‘delmin’ [-Wunused-variable] 42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny; | ^~~~~~ o8comm.h:42:23: warning: unused variable ‘del01’ [-Wunused-variable] 42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny; | ^~~~~ o8comm.h:42:18: warning: unused variable ‘del0’ [-Wunused-variable] 42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny; | ^~~~ o8comm.h:42:14: warning: unused variable ‘del’ [-Wunused-variable] 42 | X DDOUBLE del,del0,del01,delmin,tau0,tau,ny; | ^~~ o8comm.h:39:32: warning: unused variable ‘work’ [-Wunused-variable] 39 | *yu,*slack,infeas,*work; | ^~~~ o8comm.h:39:24: warning: unused variable ‘infeas’ [-Wunused-variable] 39 | *yu,*slack,infeas,*work; | ^~~~~~ o8comm.h:39:18: warning: unused variable ‘slack’ [-Wunused-variable] 39 | *yu,*slack,infeas,*work; | ^~~~~ o8comm.h:39:14: warning: unused variable ‘yu’ [-Wunused-variable] 39 | *yu,*slack,infeas,*work; | ^~ o8comm.h:38:24: warning: unused variable ‘scf0’ [-Wunused-variable] 38 | *resst,scf,scf0, | ^~~~ o8comm.h:38:20: warning: unused variable ‘scf’ [-Wunused-variable] 38 | *resst,scf,scf0, | ^~~ o8comm.h:38:14: warning: unused variable ‘resst’ [-Wunused-variable] 38 | *resst,scf,scf0, | ^~~~~ o8comm.h:37:20: warning: unused variable ‘res1’ [-Wunused-variable] 37 | *res0,*res1, | ^~~~ o8comm.h:37:14: warning: unused variable ‘res0’ [-Wunused-variable] 37 | *res0,*res1, | ^~~~ o8comm.h:36:21: warning: unused variable ‘res’ [-Wunused-variable] 36 | *w,*w1,*res, | ^~~ o8comm.h:36:17: warning: unused variable ‘w1’ [-Wunused-variable] 36 | *w,*w1,*res, | ^~ o8comm.h:36:14: warning: unused variable ‘w’ [-Wunused-variable] 36 | *w,*w1,*res, | ^ o8comm.h:35:18: warning: unused variable ‘u0’ [-Wunused-variable] 35 | X DDOUBLE *u,*u0, | ^~ o8comm.h:35:15: warning: unused variable ‘u’ [-Wunused-variable] 35 | X DDOUBLE *u,*u0, | ^ o8comm.h:33:32: warning: unused variable ‘clist’ [-Wunused-variable] 33 | *o8bind0, *aalist,*clist; | ^~~~~ o8comm.h:33:24: warning: unused variable ‘aalist’ [-Wunused-variable] 33 | *o8bind0, *aalist,*clist; | ^~~~~~ o8comm.h:33:14: warning: unused variable ‘o8bind0’ [-Wunused-variable] 33 | *o8bind0, *aalist,*clist; | ^~~~~~~ o8comm.h:32:30: warning: unused variable ‘o8bind’ [-Wunused-variable] 32 | X IINTEGER *violis,*alist,*o8bind, | ^~~~~~ o8comm.h:32:23: warning: unused variable ‘alist’ [-Wunused-variable] 32 | X IINTEGER *violis,*alist,*o8bind, | ^~~~~ o8comm.h:32:15: warning: unused variable ‘violis’ [-Wunused-variable] 32 | X IINTEGER *violis,*alist,*o8bind, | ^~~~~~ o8comm.h:30:38: warning: unused variable ‘matsc’ [-Wunused-variable] 30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc; | ^~~~~ o8comm.h:30:32: warning: unused variable ‘diag0’ [-Wunused-variable] 30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc; | ^~~~~ o8comm.h:30:24: warning: unused variable ‘scalm2’ [-Wunused-variable] 30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc; | ^~~~~~ o8comm.h:30:18: warning: unused variable ‘scalm’ [-Wunused-variable] 30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc; | ^~~~~ o8comm.h:30:16: warning: unused variable ‘a’ [-Wunused-variable] 30 | X DDOUBLE **a,scalm,scalm2,*diag0,matsc; | ^ o8comm.h:26:14: warning: unused variable ‘colle’ [-Wunused-variable] 26 | *colle; | ^~~~~ o8comm.h:25:14: warning: unused variable ‘cscal’ [-Wunused-variable] 25 | *cscal, | ^~~~~ o8comm.h:24:27: warning: unused variable ‘diag’ [-Wunused-variable] 24 | X DDOUBLE **qr,*betaq,*diag, | ^~~~ o8comm.h:24:20: warning: unused variable ‘betaq’ [-Wunused-variable] 24 | X DDOUBLE **qr,*betaq,*diag, | ^~~~~ o8comm.h:24:16: warning: unused variable ‘qr’ [-Wunused-variable] 24 | X DDOUBLE **qr,*betaq,*diag, | ^~ o8comm.h:23:34: warning: unused variable ‘rank’ [-Wunused-variable] 23 | X IINTEGER *perm,*perm1,*colno,rank; | ^~~~ o8comm.h:23:28: warning: unused variable ‘colno’ [-Wunused-variable] 23 | X IINTEGER *perm,*perm1,*colno,rank; | ^~~~~ o8comm.h:23:21: warning: unused variable ‘perm1’ [-Wunused-variable] 23 | X IINTEGER *perm,*perm1,*colno,rank; | ^~~~~ o8comm.h:23:15: warning: unused variable ‘perm’ [-Wunused-variable] 23 | X IINTEGER *perm,*perm1,*colno,rank; | ^~~~ o8comm.h:21:21: warning: unused variable ‘gresn’ [-Wunused-variable] 21 | **gres,*gresn; | ^~~~~ o8comm.h:21:15: warning: unused variable ‘gres’ [-Wunused-variable] 21 | **gres,*gresn; | ^~~~ o8comm.h:20:38: warning: unused variable ‘gphi1’ [-Wunused-variable] 20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1, | ^~~~~ o8comm.h:20:31: warning: unused variable ‘gphi0’ [-Wunused-variable] 20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1, | ^~~~~ o8comm.h:20:26: warning: unused variable ‘qgf’ [-Wunused-variable] 20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1, | ^~~ o8comm.h:20:21: warning: unused variable ‘gfn’ [-Wunused-variable] 20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1, | ^~~ o8comm.h:20:15: warning: unused variable ‘gradf’ [-Wunused-variable] 20 | X DDOUBLE *gradf,gfn,*qgf,*gphi0,*gphi1, | ^~~~~ o8comm.h:18:24: warning: unused variable ‘resmin’ [-Wunused-variable] 18 | *dd,*difx,*resmin; | ^~~~~~ o8comm.h:18:18: warning: unused variable ‘difx’ [-Wunused-variable] 18 | *dd,*difx,*resmin; | ^~~~ o8comm.h:18:14: warning: unused variable ‘dd’ [-Wunused-variable] 18 | *dd,*difx,*resmin; | ^~ o8comm.h:17:42: warning: unused variable ‘d0’ [-Wunused-variable] 17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0, | ^~ o8comm.h:17:39: warning: unused variable ‘d’ [-Wunused-variable] 17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0, | ^ o8comm.h:17:33: warning: unused variable ‘xmin’ [-Wunused-variable] 17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0, | ^~~~ o8comm.h:17:29: warning: unused variable ‘x1’ [-Wunused-variable] 17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0, | ^~ o8comm.h:17:25: warning: unused variable ‘x0’ [-Wunused-variable] 17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0, | ^~ o8comm.h:17:15: warning: unused variable ‘donlp2_x’ [-Wunused-variable] 17 | X DDOUBLE *donlp2_x,*x0,*x1,*xmin,*d,*d0, | ^~~~~~~~ o8comm.h:16:39: warning: unused variable ‘upsim’ [-Wunused-variable] 16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim; | ^~~~~ o8comm.h:16:32: warning: unused variable ‘cosphi’ [-Wunused-variable] 16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim; | ^~~~~~ o8comm.h:16:25: warning: unused variable ‘dirder’ [-Wunused-variable] 16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim; | ^~~~~~ o8comm.h:16:18: warning: unused variable ‘sigmin’ [-Wunused-variable] 16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim; | ^~~~~~ o8comm.h:16:14: warning: unused variable ‘sig’ [-Wunused-variable] 16 | X DDOUBLE sig,sigmin,dirder,cosphi,upsim; | ^~~ o8comm.h:15:70: warning: unused variable ‘d0norm’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~~~ o8comm.h:15:63: warning: unused variable ‘ddnorm’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~~~ o8comm.h:15:57: warning: unused variable ‘dscal’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~~ o8comm.h:15:52: warning: unused variable ‘sig0’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~ o8comm.h:15:45: warning: unused variable ‘x0norm’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~~~ o8comm.h:15:39: warning: unused variable ‘xnorm’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~~ o8comm.h:15:34: warning: unused variable ‘b2n0’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~ o8comm.h:15:30: warning: unused variable ‘b2n’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~ o8comm.h:15:18: warning: unused variable ‘donlp2_fmin’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~~~~~~~~ o8comm.h:15:13: warning: unused variable ‘fxst’ [-Wunused-variable] 15 | fxst,donlp2_fmin,b2n,b2n0,xnorm,x0norm,sig0,dscal,ddnorm,d0norm; | ^~~~ o8comm.h:14:41: warning: unused variable ‘fx1’ [-Wunused-variable] 14 | phi,phi0,phi1,phimin,fx,fx0,fx1, | ^~~ o8comm.h:14:37: warning: unused variable ‘fx0’ [-Wunused-variable] 14 | phi,phi0,phi1,phimin,fx,fx0,fx1, | ^~~ o8comm.h:14:34: warning: unused variable ‘fx’ [-Wunused-variable] 14 | phi,phi0,phi1,phimin,fx,fx0,fx1, | ^~ o8comm.h:14:27: warning: unused variable ‘phimin’ [-Wunused-variable] 14 | phi,phi0,phi1,phimin,fx,fx0,fx1, | ^~~~~~ o8comm.h:14:22: warning: unused variable ‘phi1’ [-Wunused-variable] 14 | phi,phi0,phi1,phimin,fx,fx0,fx1, | ^~~~ o8comm.h:14:17: warning: unused variable ‘phi0’ [-Wunused-variable] 14 | phi,phi0,phi1,phimin,fx,fx0,fx1, | ^~~~ o8comm.h:14:13: warning: unused variable ‘phi’ [-Wunused-variable] 14 | phi,phi0,phi1,phimin,fx,fx0,fx1, | ^~~ o8comm.h:13:24: warning: unused variable ‘psimin’ [-Wunused-variable] 13 | psi1,psist,psimin, | ^~~~~~ o8comm.h:13:18: warning: unused variable ‘psist’ [-Wunused-variable] 13 | psi1,psist,psimin, | ^~~~~ o8comm.h:13:13: warning: unused variable ‘psi1’ [-Wunused-variable] 13 | psi1,psist,psimin, | ^~~~ o8comm.h:12:42: warning: unused variable ‘psi0’ [-Wunused-variable] 12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0, | ^~~~ o8comm.h:12:38: warning: unused variable ‘psi’ [-Wunused-variable] 12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0, | ^~~ o8comm.h:12:31: warning: unused variable ‘upsist’ [-Wunused-variable] 12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0, | ^~~~~~ o8comm.h:12:25: warning: unused variable ‘upsi1’ [-Wunused-variable] 12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0, | ^~~~~ o8comm.h:12:19: warning: unused variable ‘upsi0’ [-Wunused-variable] 12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0, | ^~~~~ o8comm.h:12:14: warning: unused variable ‘upsi’ [-Wunused-variable] 12 | X DDOUBLE upsi,upsi0,upsi1,upsist,psi,psi0, | ^~~~ o8comm.h:10:21: warning: unused variable ‘phase’ [-Wunused-variable] 10 | X IINTEGER itstep,phase; | ^~~~~ o8comm.h:10:14: warning: unused variable ‘itstep’ [-Wunused-variable] 10 | X IINTEGER itstep,phase; | ^~~~~~ o8comm.h:9:16: warning: unused variable ‘accinf’ [-Wunused-variable] 9 | X DDOUBLE **accinf; | ^~~~~~ o8comm.h:8:14: warning: unused variable ‘optite’ [-Wunused-variable] 8 | X RREAL optite; | ^~~~~~ o8comm.h:7:14: warning: unused variable ‘runtim’ [-Wunused-variable] 7 | X RREAL runtim; | ^~~~~~ In file included from o8comm.h:5: o8fuco.h:33:13: warning: unused variable ‘cfuerr’ [-Wunused-variable] 33 | X LLOGICAL *cfuerr; | ^~~~~~ o8fuco.h:31:13: warning: unused variable ‘gconst’ [-Wunused-variable] 31 | X LLOGICAL *gconst; | ^~~~~~ o8fuco.h:29:14: warning: unused variable ‘gunit’ [-Wunused-variable] 29 | X IINTEGER **gunit; | ^~~~~ o8fuco.h:27:13: warning: unused variable ‘nonlinlist’ [-Wunused-variable] 27 | X IINTEGER *nonlinlist; | ^~~~~~~~~~ o8fuco.h:25:15: warning: unused variable ‘ng’ [-Wunused-variable] 25 | X IINTEGER nh,ng; | ^~ o8fuco.h:25:12: warning: unused variable ‘nh’ [-Wunused-variable] 25 | X IINTEGER nh,ng; | ^~ o8fuco.h:20:22: warning: unused variable ‘confuerr’ [-Wunused-variable] 20 | X LLOGICAL ffuerr,*confuerr; | ^~~~~~~~ o8fuco.h:20:14: warning: unused variable ‘ffuerr’ [-Wunused-variable] 20 | X LLOGICAL ffuerr,*confuerr; | ^~~~~~ o8fuco.h:18:37: warning: unused variable ‘cgres’ [-Wunused-variable] 18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres; | ^~~~~ o8fuco.h:18:31: warning: unused variable ‘cres’ [-Wunused-variable] 18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres; | ^~~~ o8fuco.h:18:23: warning: unused variable ‘cfincr’ [-Wunused-variable] 18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres; | ^~~~~~ o8fuco.h:18:18: warning: unused variable ‘icgf’ [-Wunused-variable] 18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres; | ^~~~ o8fuco.h:18:14: warning: unused variable ‘icf’ [-Wunused-variable] 18 | X IINTEGER icf,icgf,cfincr,*cres,*cgres; | ^~~ o8fuco.h:16:40: warning: unused variable ‘cold’ [-Wunused-variable] 16 | X LLOGICAL ident,eqres,silent,analyt,cold; | ^~~~ o8fuco.h:16:33: warning: unused variable ‘analyt’ [-Wunused-variable] 16 | X LLOGICAL ident,eqres,silent,analyt,cold; | ^~~~~~ o8fuco.h:16:26: warning: unused variable ‘silent’ [-Wunused-variable] 16 | X LLOGICAL ident,eqres,silent,analyt,cold; | ^~~~~~ o8fuco.h:16:20: warning: unused variable ‘eqres’ [-Wunused-variable] 16 | X LLOGICAL ident,eqres,silent,analyt,cold; | ^~~~~ o8fuco.h:16:14: warning: unused variable ‘ident’ [-Wunused-variable] 16 | X LLOGICAL ident,eqres,silent,analyt,cold; | ^~~~~ o8fuco.h:15:37: warning: unused variable ‘singul’ [-Wunused-variable] 15 | X LLOGICAL intakt,te0,te1,te2,te3,singul; | ^~~~~~ o8fuco.h:15:33: warning: unused variable ‘te3’ [-Wunused-variable] 15 | X LLOGICAL intakt,te0,te1,te2,te3,singul; | ^~~ o8fuco.h:15:29: warning: unused variable ‘te2’ [-Wunused-variable] 15 | X LLOGICAL intakt,te0,te1,te2,te3,singul; | ^~~ o8fuco.h:15:25: warning: unused variable ‘te1’ [-Wunused-variable] 15 | X LLOGICAL intakt,te0,te1,te2,te3,singul; | ^~~ o8fuco.h:15:21: warning: unused variable ‘te0’ [-Wunused-variable] 15 | X LLOGICAL intakt,te0,te1,te2,te3,singul; | ^~~ o8fuco.h:15:14: warning: unused variable ‘intakt’ [-Wunused-variable] 15 | X LLOGICAL intakt,te0,te1,te2,te3,singul; | ^~~~~~ o8fuco.h:13:14: warning: unused variable ‘epsdif’ [-Wunused-variable] 13 | X DDOUBLE epsdif; | ^~~~~~ o8fuco.h:11:13: warning: unused variable ‘name’ [-Wunused-variable] 11 | X char name[41]; | ^~~~ o8fuco.h:9:28: warning: unused variable ‘deldif’ [-Wunused-variable] 9 | X DDOUBLE epsmac,tolmac,deldif; | ^~~~~~ o8fuco.h:9:21: warning: unused variable ‘tolmac’ [-Wunused-variable] 9 | X DDOUBLE epsmac,tolmac,deldif; | ^~~~~~ o8fuco.h:9:14: warning: unused variable ‘epsmac’ [-Wunused-variable] 9 | X DDOUBLE epsmac,tolmac,deldif; | ^~~~~~ o8fuco.h:7:52: warning: unused variable ‘mdualm’ [-Wunused-variable] 7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm; | ^~~~~~ o8fuco.h:7:44: warning: unused variable ‘ndualm’ [-Wunused-variable] 7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm; | ^~~~~~ o8fuco.h:7:19: warning: unused variable ‘nres’ [-Wunused-variable] 7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm; | ^~~~ o8fuco.h:7:16: warning: unused variable ‘nr’ [-Wunused-variable] 7 | X IINTEGER n,nr,nres,nlin,nonlin, nstep, ndualm, mdualm; | ^~ o8fuco.h:5:26: warning: unused variable ‘lup’ [-Wunused-variable] 5 | X LLOGICAL *val,*llow,*lup; | ^~~ o8fuco.h:5:20: warning: unused variable ‘llow’ [-Wunused-variable] 5 | X LLOGICAL *val,*llow,*lup; | ^~~~ o8fuco.h:5:15: warning: unused variable ‘val’ [-Wunused-variable] 5 | X LLOGICAL *val,*llow,*lup; | ^~~ In file included from gme.c:663: o8cons.h: In function ‘solchk_gme’: o8cons.h:11:5: warning: unused variable ‘tp4’ [-Wunused-variable] 11 | tp3,tp4; | ^~~ o8cons.h:11:1: warning: unused variable ‘tp3’ [-Wunused-variable] 11 | tp3,tp4; | ^~~ o8cons.h:10:21: warning: unused variable ‘tp2’ [-Wunused-variable] 10 | tm4,tm3,tm2,tm1,tp1,tp2, | ^~~ o8cons.h:10:17: warning: unused variable ‘tp1’ [-Wunused-variable] 10 | tm4,tm3,tm2,tm1,tp1,tp2, | ^~~ o8cons.h:10:13: warning: unused variable ‘tm1’ [-Wunused-variable] 10 | tm4,tm3,tm2,tm1,tp1,tp2, | ^~~ o8cons.h:10:9: warning: unused variable ‘tm2’ [-Wunused-variable] 10 | tm4,tm3,tm2,tm1,tp1,tp2, | ^~~ o8cons.h:10:5: warning: unused variable ‘tm3’ [-Wunused-variable] 10 | tm4,tm3,tm2,tm1,tp1,tp2, | ^~~ o8cons.h:10:1: warning: unused variable ‘tm4’ [-Wunused-variable] 10 | tm4,tm3,tm2,tm1,tp1,tp2, | ^~~ o8cons.h:9:22: warning: unused variable ‘tm5’ [-Wunused-variable] 9 | tm10,tm9,tm8,tm7,tm6,tm5, | ^~~ o8cons.h:9:18: warning: unused variable ‘tm6’ [-Wunused-variable] 9 | tm10,tm9,tm8,tm7,tm6,tm5, | ^~~ o8cons.h:9:14: warning: unused variable ‘tm7’ [-Wunused-variable] 9 | tm10,tm9,tm8,tm7,tm6,tm5, | ^~~ o8cons.h:9:10: warning: unused variable ‘tm8’ [-Wunused-variable] 9 | tm10,tm9,tm8,tm7,tm6,tm5, | ^~~ o8cons.h:9:6: warning: unused variable ‘tm9’ [-Wunused-variable] 9 | tm10,tm9,tm8,tm7,tm6,tm5, | ^~~ o8cons.h:9:1: warning: unused variable ‘tm10’ [-Wunused-variable] 9 | tm10,tm9,tm8,tm7,tm6,tm5, | ^~~~ o8cons.h:8:5: warning: unused variable ‘tm12’ [-Wunused-variable] 8 | c45,tm12, | ^~~~ o8cons.h:8:1: warning: unused variable ‘c45’ [-Wunused-variable] 8 | c45,tm12, | ^~~ o8cons.h:7:22: warning: unused variable ‘p9’ [-Wunused-variable] 7 | onep5,p2,p4,p5,p7,p8,p9, | ^~ o8cons.h:7:19: warning: unused variable ‘p8’ [-Wunused-variable] 7 | onep5,p2,p4,p5,p7,p8,p9, | ^~ o8cons.h:7:16: warning: unused variable ‘p7’ [-Wunused-variable] 7 | onep5,p2,p4,p5,p7,p8,p9, | ^~ o8cons.h:7:13: warning: unused variable ‘p5’ [-Wunused-variable] 7 | onep5,p2,p4,p5,p7,p8,p9, | ^~ o8cons.h:7:10: warning: unused variable ‘p4’ [-Wunused-variable] 7 | onep5,p2,p4,p5,p7,p8,p9, | ^~ o8cons.h:7:7: warning: unused variable ‘p2’ [-Wunused-variable] 7 | onep5,p2,p4,p5,p7,p8,p9, | ^~ o8cons.h:7:1: warning: unused variable ‘onep5’ [-Wunused-variable] 7 | onep5,p2,p4,p5,p7,p8,p9, | ^~~~~ o8cons.h:6:20: warning: unused variable ‘onep3’ [-Wunused-variable] 6 | twom2,twop4,twop11,onep3, | ^~~~~ o8cons.h:6:13: warning: unused variable ‘twop11’ [-Wunused-variable] 6 | twom2,twop4,twop11,onep3, | ^~~~~~ o8cons.h:6:7: warning: unused variable ‘twop4’ [-Wunused-variable] 6 | twom2,twop4,twop11,onep3, | ^~~~~ o8cons.h:6:1: warning: unused variable ‘twom2’ [-Wunused-variable] 6 | twom2,twop4,twop11,onep3, | ^~~~~ o8cons.h:5:10: warning: unused variable ‘seven’ [-Wunused-variable] 5 | five,six,seven, | ^~~~~ o8cons.h:5:6: warning: unused variable ‘six’ [-Wunused-variable] 5 | five,six,seven, | ^~~ o8cons.h:5:1: warning: unused variable ‘five’ [-Wunused-variable] 5 | five,six,seven, | ^~~~ o8cons.h:4:41: warning: unused variable ‘four’ [-Wunused-variable] 4 | extern const DDOUBLE zero,one,two,three,four, | ^~~~ o8cons.h:4:35: warning: unused variable ‘three’ [-Wunused-variable] 4 | extern const DDOUBLE zero,one,two,three,four, | ^~~~~ o8cons.h:4:31: warning: unused variable ‘two’ [-Wunused-variable] 4 | extern const DDOUBLE zero,one,two,three,four, | ^~~ o8cons.h:4:27: warning: unused variable ‘one’ [-Wunused-variable] 4 | extern const DDOUBLE zero,one,two,three,four, | ^~~ o8cons.h:4:22: warning: unused variable ‘zero’ [-Wunused-variable] 4 | extern const DDOUBLE zero,one,two,three,four, | ^~~~ make: *** [/home/biocbuild/bbs-3.21-bioc/R/etc/Makeconf:195: gme.o] Error 1 ERROR: compilation failed for package ‘puma’ * removing ‘/tmp/RtmpNgmp6M/Rinst1477963850afd4/puma’ ----------------------------------- ERROR: package installation failed