Aaron Lun
| Snapshot Date: 2024-10-13 14:00 -0400 (Sun, 13 Oct 2024) |
| git_url: https://git.bioconductor.org/packages/TileDBArray |
| git_branch: RELEASE_3_19 |
| git_last_commit: d64fc4f |
| git_last_commit_date: 2024-09-07 01:07:42 -0400 (Sat, 07 Sep 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-10-15 21:55 -0400 (Tue, 15 Oct 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4763 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4529 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4479 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2161/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TileDBArray 1.14.1 (landing page) Aaron Lun
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the TileDBArray package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TileDBArray.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: TileDBArray |
| Version: 1.14.1 |
| Command: rm -rf TileDBArray.buildbin-libdir && mkdir TileDBArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TileDBArray_1.14.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R TileDBArray.buildbin-libdir |
| StartedAt: 2024-10-15 20:38:09 -0400 (Tue, 15 Oct 2024) |
| EndedAt: 2024-10-15 20:38:48 -0400 (Tue, 15 Oct 2024) |
| EllapsedTime: 38.7 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: TileDBArray_1.14.1.tgz |
| PackageFileSize: 736.5 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf TileDBArray.buildbin-libdir && mkdir TileDBArray.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh TileDBArray_1.14.1.tar.gz /Library/Frameworks/R.framework/Resources/bin/R TileDBArray.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=TileDBArray.buildbin-libdir TileDBArray_1.14.1.tar.gz' >>>>>>> * installing *source* package ‘TileDBArray’ ... ** using staged installation ** libs using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c remap_indices.cpp -o remap_indices.o clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o TileDBArray.so RcppExports.o remap_indices.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.19-bioc/meat/TileDBArray.buildbin-libdir/00LOCK-TileDBArray/00new/TileDBArray/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TileDBArray) >>>>>>> >>>>>>> FIXING PATHS TO DYNAMIC LIBRARIES FOR TileDBArray.buildbin-libdir/TileDBArray/libs/TileDBArray.so >>>>>>> >>>>>>> Paths before fix: TileDBArray.buildbin-libdir/TileDBArray/libs/TileDBArray.so: TileDBArray.so (compatibility version 0.0.0, current version 0.0.0) /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libR.dylib (compatibility version 4.4.0, current version 4.4.1) /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation (compatibility version 150.0.0, current version 1775.118.101) /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 905.6.0) /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5) >>>>>>> Fix with install_name_tool: install_name_tool -change "/usr/local/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libgcc_s.1.1.dylib" "TileDBArray.buildbin-libdir/TileDBArray/libs/TileDBArray.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libgfortran.5.dylib" "TileDBArray.buildbin-libdir/TileDBArray/libs/TileDBArray.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libquadmath.0.dylib" "TileDBArray.buildbin-libdir/TileDBArray/libs/TileDBArray.so" >>>>>>> Paths after fix: TileDBArray.buildbin-libdir/TileDBArray/libs/TileDBArray.so: TileDBArray.so (compatibility version 0.0.0, current version 0.0.0) /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libR.dylib (compatibility version 4.4.0, current version 4.4.1) /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation (compatibility version 150.0.0, current version 1775.118.101) /usr/lib/libc++.1.dylib (compatibility version 1.0.0, current version 905.6.0) /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1292.100.5)