waveTiling
This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see waveTiling.
Wavelet-Based Models for Tiling Array Transcriptome Analysis
Bioconductor version: 3.9
This package is designed to conduct transcriptome analysis for tiling arrays based on fast wavelet-based functional models.
Author: Kristof De Beuf <kristof.debeuf at UGent.be>, Peter Pipelers <peter.pipelers at ugent.be> and Lieven Clement <lieven.clement at gmail.com>
Maintainer: Kristof De Beuf <kristof.debeuf at UGent.be>
citation("waveTiling")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("waveTiling")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("waveTiling")| The waveTiling package | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, Microarray, Software, TimeCourse |
| Version | 1.26.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | GPL (>=2) |
| Depends | oligo, oligoClasses, Biobase, Biostrings, GenomeGraphs |
| Imports | methods, affy, preprocessCore, GenomicRanges, waveslim, IRanges |
| System Requirements | |
| URL | https://r-forge.r-project.org/projects/wavetiling/ |
See More
| Suggests | BSgenome, BSgenome.Athaliana.TAIR.TAIR9, waveTilingData, pd.atdschip.tiling, TxDb.Athaliana.BioMart.plantsmart22 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | waveTiling_1.26.0.tar.gz |
| Windows Binary | waveTiling_1.26.0.zip |
| Mac OS X 10.11 (El Capitan) | waveTiling_1.26.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/waveTiling |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/waveTiling |
| Bioc Package Browser | https://code.bioconductor.org/browse/waveTiling/ |
| Package Short Url | https://bioconductor.org/packages/waveTiling/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |