groHMM
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see groHMM.
GRO-seq Analysis Pipeline
Bioconductor version: 3.9
A pipeline for the analysis of GRO-seq data.
Author: Charles G. Danko, Minho Chae, Andre Martins, W. Lee Kraus
Maintainer: Anusha Nagari <anusha.nagari at utsouthwestern.edu>, Tulip Nandu <tulip.nandu at utsouthwestern.edu>, W. Lee Kraus <lee.kraus at utsouthwestern.edu>
citation("groHMM")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("groHMM")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("groHMM")| groHMM tutorial | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Sequencing, Software |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.0.2), MASS, parallel, S4Vectors(>= 0.17.25), IRanges(>= 2.13.12), GenomeInfoDb, GenomicRanges(>= 1.31.8), GenomicAlignments(>= 1.15.6), rtracklayer(>= 1.39.7) |
| Imports | |
| System Requirements | |
| URL | https://github.com/Kraus-Lab/groHMM |
| Bug Reports | https://github.com/Kraus-Lab/groHMM/issues |
See More
| Suggests | BiocStyle, GenomicFeatures, edgeR, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | groHMM_1.18.0.tar.gz |
| Windows Binary | groHMM_1.18.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | groHMM_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/groHMM |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/groHMM |
| Bioc Package Browser | https://code.bioconductor.org/browse/groHMM/ |
| Package Short Url | https://bioconductor.org/packages/groHMM/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |