epivizrData
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see epivizrData.
Data Management API for epiviz interactive visualization app
Bioconductor version: 3.9
Serve data from Bioconductor Objects through a WebSocket connection.
Author: Hector Corrada Bravo [aut, cre], Florin Chelaru [aut]
Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>
Citation (from within R, enter
citation("epivizrData")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epivizrData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("epivizrData")| Vignette Title | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Infrastructure, Software, Visualization |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.4), methods, epivizrServer(>= 1.1.1), Biobase |
| Imports | S4Vectors, GenomicRanges, SummarizedExperiment(>= 0.2.0), OrganismDbi, GenomicFeatures, GenomeInfoDb, IRanges, ensembldb |
| System Requirements | |
| URL | http://epiviz.github.io |
| Bug Reports | https://github.com/epiviz/epivizrData/issues |
See More
| Suggests | testthat, roxygen2, bumphunter, hgu133plus2.db, Mus.musculus, TxDb.Mmusculus.UCSC.mm10.knownGene, rjson, knitr, rmarkdown, BiocStyle, EnsDb.Mmusculus.v79, AnnotationHub, rtracklayer, utils, RMySQL, DBI |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | epivizr, epivizrChart, metavizr |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | epivizrData_1.12.0.tar.gz |
| Windows Binary | epivizrData_1.12.0.zip |
| Mac OS X 10.11 (El Capitan) | epivizrData_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/epivizrData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/epivizrData |
| Bioc Package Browser | https://code.bioconductor.org/browse/epivizrData/ |
| Package Short Url | https://bioconductor.org/packages/epivizrData/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |