BSgenome.Vvinifera.URGI.IGGP8X

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Vvinifera.URGI.IGGP8X.

Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (IGGP version 8X)


Bioconductor version: 3.8

Full reference nuclear genome sequences for Vitis vinifera subsp. vinifera PN40024 (derived from Pinot Noir and close to homozygosity after 6-9 rounds of selfing) as assembled by the IGGP (version 8X) and available at the URGI (INRA). More details in Jaillon et al (Nature, 2007).

Author: Timothee Flutre [cre,aut]

Maintainer: Timothee Flutre <timothee.flutre at supagro.inra.fr>

Citation (from within R, enter citation("BSgenome.Vvinifera.URGI.IGGP8X")):

Installation

To install this package, start R (version "3.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Vvinifera.URGI.IGGP8X")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, BSgenome, Genetics, Vitis_vinifera
Version 0.1
License CC0
Depends BSgenome(>= 1.38.0)
Imports BSgenome
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Vvinifera.URGI.IGGP8X_0.1.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Package Short Url https://bioconductor.org/packages/BSgenome.Vvinifera.URGI.IGGP8X/
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