COMET 1.2.1 - 2016-03-10
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- Upate the vignette for the issue in window build
- Update manual documentations

COMET 1.0.3 - 2015-12-06
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- Add functions to visualise data from FANTOM, GeTEX and Hi-C data
- Update the vignette related to these new functions

COMET 1.0.2 - 2015-08-10
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- Add the option to visualise beta values in changing the size of symbole relative to the absolue value of beta valuein the top of plot
- Visualisation of RoadMap data for chrommHMM for specific tissues
- Visualisation of metQTL data and of eQTL data

COMET 1.0.1 - 2015-07-10
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- Update the vignette (need to install the package psych, command line to check the new package before upload on bioconductor)
- New functions for annotation tracks (4 functions related to Regulation ENSEMBL biomart, 1 related to UCSC [segmental duplications])
- New functions for change colors in genesENSEMBL and transciptENSEMBL called interestGenesENSEMBL and interestTranscriptENSEMBL
- Correction for uppercase to lowcase for the word "ASSO" related to the option disp.association
- New dataset related to new functions

COMET 1.0.0 - 2015-04-15
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- Enter in the stable release of Bioconductor

COMET 0.99.10 - 2015-04-10
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- Update regulationBiomart function and the pre-computed data associated because ENSEMBL has recently updated their schema in Biomart for these data.
- Update the documentations (man and vignette)

COMET 0.99.9 - 2015-03-10
-------------------------
- Update snpBiomart and structureBiomart functions and the pre-computed data associated because ENSEMBL has recently updated their schema in Biomart for these data.
- Update the documentations (man and vignette)
- Add the function compute.pvalue.cormatrix and allow the visualisation of only correlation under a significant level. (use the library psych)
- Add the function comet.list to list the correlations between omic features
- Replace capital letter by low letter
- Update Shiny-based web application according to new functions

COMET 0.99.8 - 2015-02-15
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- Correction genesNameENSEMBL in order not to run if no ENSEMBL gene in the region of interest 
- Correction the error related to the loading of correlation matrice
- Update the visualisation of Chromosome with the name of band (related to an update of Gviz)
- Remove the visualisation of border for genes and transcripts to help the visualisation of different exons
- Update the vignette about comet's Shiny website and colors of tracks
- Update the annotation tracks as Gviz was updated and now coMET can work on Gviz (version 1.10.9, current version)

COMET 0.99.7 - 2014-12-19
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- Update the function "genesENSEMBL", "genesNameENSEMBL", "transcriptENSEMBL", and "regulationBiomart" because ENSEMBL mart changed the names of field in GChr37


COMET 0.99.6 - 2014-11-25
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- add in "import IRanges and S4Vectors" in NAMESPACE
- Fix mistakes in the vignette


COMET 0.99.5 - 2014-11-06
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- Update the annotation tracks using Gviz because of the update of Gviz (version 1.11.2, development version)

COMET 0.99.4 - 2014-11-05
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- Update the manual and the vignette
- Fix little bugs
- Update the annotation tracks using BiomartGeneRegionTrack of Gviz


COMET 0.99.3 - 2014-10-25
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- Update the manuel and the vignette
- Update the function to create annotation tracks connecting to ENSEMBL mart (change of schema)
- Fix little bug
- Add the function to define the reference genome (cf the change of schema of ENSEMBL mart)


COMET 0.99.2 - 2014-10-16
-----------------------------

- Update the manual comet.web file

COMET 0.99.1 - 2014-10-16
-----------------------------

- Add the package "BiocStyle" in Suggests of DESCRIPTION file
- Change the absolute path to relative path of files (info file, expression file, and correlation file) in vignette and manual


COMET 0.99.0 - 2014-09-24
-----------------------------

- Version draft of this script