mosaicsExample

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see mosaicsExample.

Example data for the mosaics package, which implements MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data for transcription factor binding and histone modification


Bioconductor version: 3.17

Data for the mosaics package, consisting of (1) chromosome 22 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding and H3K4me3 modification in MCF7 cell line from ENCODE database (HG19) and (2) chromosome 21 ChIP and control sample data from a ChIP-seq experiment of STAT1 binding, with mappability, GC content, and sequence ambiguity scores of human genome HG18.

Author: Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles

Maintainer: Dongjun Chung <dongjun.chung at gmail.com>

Citation (from within R, enter citation("mosaicsExample")):

Installation

To install this package, start R (version "4.3") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mosaicsExample")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews ChIPseqData, ExperimentData, Homo_sapiens
Version 1.38.0
License GPL (>= 2)
Depends R (>= 2.11.1)
Imports
System Requirements
URL http://groups.google.com/group/mosaics_user_group
See More
Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me mosaics
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package mosaicsExample_1.38.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/mosaicsExample
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/mosaicsExample
Package Short Url https://bioconductor.org/packages/mosaicsExample/
Package Downloads Report Download Stats