Changes in version 2.12.00                       

(GitHub master branch/BC 3.15 RC)

NEW FUNCTIONS

  - gtMarkers, prepAscat, prepAscat_t, segmentLogR provides interface to
    copy number analysis with ASCAT.
  - plotMosdepth and plotMosdepth_t processes output generated by
    Mosdepth and performs copy number analysis with DNAcopy
  - cancerhotspotsAggr Aggregates cancerhotspots reports

ENHANCEMENTS

  - Added support for plotting adjusted p-values in somaticInteractions.
    Issue: 813
  - Added support for the protein structure BECN2 Issue: 696