Changes in version 1.5.7                        

  - Add TreatmentResponseExperiment class, a simple wrapper around
    LongTable to make the class syntax more domain specific
  - Add CoreSet2 structure to support creation of CoreSets with the
    modified class structure introducted in BioC 3.13
  - CoreSets can now be made with treatment combination experiments via
    the TreatmentResponseExperiment class!

                        Changes in version 1.5.6                        

  - Fix bug in LongTable -> data.table coerce method that was causing
    rows of some assays to be dropped (closes issue #)

                        Changes in version 1.5.5                        

  - Fix bug in .distancePointLine where function fails with no intercept
    specified (Issue #120)
  - Added support for aggregating an assay inside of a LongTable class
    object
  - Some in-progress updates to the CoreSet constructor which will be
    completed for the Fall release
  - Fixed an error in treatmentNames example
  - Fixed roxygen2 documentation warnings about S4 method documentation
  - Overhauled LongTable coerce methods to use the LongTableDataMapper
    class instead of the deprecated 'LongTable.config' attribute

                        Changes in version 1.5.4                        

  - Fix bug in $<- and [[<- methods where value was returned instead of
    updated object
  - Fix bug in .sanitize input caused by length > 1 coercing to logical
    vector

                        Changes in version 1.5.3                        

  - Fix bug in connectivityScore caused by length > 1 coercing to
    logical vector; this should fix errors in RadioGx and PharmacoGx
    vignettes that were caused by failed R CMD build

                        Changes in version 1.5.2                        

  - Add subsetBySample method for CoreSet object; this is the first step
    in modularizing the subset methods for reuse in dependent packages
  - Added a CoreSet-utils documentation section to document subset,
    intersect, combine and other set operations for a CoreSet object.

                        Changes in version 1.5.1                        

  - Fixed some spelling errors and incorrect code chunk configurations
    in the LongTable vignette
  - Fix bug in .rebuildProfiles where the function fails if replicate_id
    is assigned as a rowID column in the LongTable in @sensitivity

                        Changes in version 1.5.0                        

  - Bioconductor spring 2021 release
  - Added the DataMapper abstract class
  - Added the LongTableDataMapper concrete class
  - Added the metaConstruct method, for making an S4 object from a
    sub-class of DataMapper
  - Updated LongTable vignette with documentation for the DataMapper and
    LongTableDataMapper
  - Refactored various methods to work with a LongTable in @sensititivty
  - Refactored various methods to work with a MultiAssayExperiment in
    @molecularProfiles

                        Changes in version 1.1.5                        

  - Implemented a new class, the LongTable, to store the results of a
    treatment response experiment. This class provides a flexible and
    fast data storage object which can be subclassed for use in other R
    packages.
  - Added vignette documenting LongTable accessors and usage of the new
    object.

                        Changes in version 1.0.2                        

  - Bug fix: suppress warnings thrown by piano::runGSA inside the
    connectivitScore function

                        Changes in version 1.0.1                        

  - Updated the CoreGx vignette to include more information on extending
    the CoreSet class for use in other treatment-response experiments.

                        Changes in version 1.0.0                        

  - Implemented molecularProfiles as SummarizedExperiments instead of
    ExpressionSets
  - Modifying generic implementation to add ...; allows for additional
    arguments in setMethods() for CoreGx generics
  - Removing package from CRAN
  - Submitting package to Bioconductor