Changes in version 1.11.3 - Reconstruct the emapplot function and replace emapplot_cluster by emapplot(group_category = TRUE) - fix bug in emapplot_cluster.enrichResult when the number of cluster is 2 (2021-2-24, Wed) - fix bug in treeplot: The legend is not the right size (2021-2-6, Sat). - fix dotplot for label_format parameter doesn't work(2021-2-3, Wed). - fix bug in gseaplot2(2021-1-28, Thu) Changes in version 1.11.2 - update document (2021-1-7, Thu) - update dotplot: replace ggsymbol::geom_symbol with ggstar::geom_star(2021-1-6, Wed) - add parameter shadowtext for three functions: emapplot, emapplot_cluster and cnetplot. (2021-1-5, Tue) - update dotplot: supports the use of shapes and line colors to distinguish groups (2021-1-3, Sun) - add treeplot function (2020-12-29, Tue) - rename function get_ww to get_similarity_matrix (2020-12-29, Tue) - move the emapplot related functions to emapplot_utilities.R - fix bug in emapplot and cnetplot when enrichment result is one line (2020-12-26, Sat) - fix pairwise_termsim for the bug of repeated filtering of showCategory(2020-12-23, Wed) - fix showCategory for cnetplot, emapplot, emapplot_cluster when showCategory is a vector of term descriptions Changes in version 1.11.1 - add orderBy and decreasing parameters for ridgeplot() (2020-11-19, Thu) - https://github.com/YuLab-SMU/enrichplot/pull/84/ - update emapplot_cluster() to label cluster in center by default and use ggrepel if setting repel = TRUE (2020-11-08, Mon) - https://github.com/YuLab-SMU/enrichplot/pull/81 - add a label_format parameter to support formatting label (2020-10-28, Wed) - if provided with a numeric value will simply string wrap by default - if provided with a function will instead set labels = user_defined_function() within the scale function - https://github.com/YuLab-SMU/enrichplot/pull/73 Changes in version 1.10.0 - Bioconductor 3.12 release (2020-10-28, Wed) Changes in version 1.9.5 - fix wordcloud_i (2020-10-15, Thu) - Remove similarity calculation from emapplot Changes in version 1.9.4 - implement pairwise_termsim to calculate similarity of enriched terms (2020-10-09, Fri) - https://github.com/YuLab-SMU/enrichplot/pull/67 - change parameters to be more consistent - https://github.com/YuLab-SMU/enrichplot/pull/62 Changes in version 1.9.3 - add node_label_size parameter to adjust the size of node label in emapplot function (2020-09-18, Fri) Changes in version 1.9.2 - add function emapplot_cluster (2020-09-01, Tue) Changes in version 1.7.3 - update barplot to remove using coord_flip() (2020-09-10, Thu) - update cnetplot color scale to tolerate with skewed foldchange (2020-03-13, Fri) - https://github.com/YuLab-SMU/enrichplot/pull/40 Changes in version 1.7.1 - cnetplot for compareClusterResult (compareCluster output) (2019-12-02, Mon) - move barplot, dotplot and fortify methods of compareClusterResult from clusterProfiler (2019-11-2, Sat) Changes in version 1.6.0 - Bioconductor 3.10 release Changes in version 1.5.2 - update node_label parameter in cnetplot to support selection of subset to be labeled (2019-09-27, Fri) - https://yulab-smu.github.io/clusterProfiler-book/chapter12.html#fig:cnetNodeLabel - upsetplot for gseaResult (2019-09-25, Wed) - reimplement upsetplot based on ggupset Changes in version 1.5.1 - gseadist for plotting logFC distribution of selected gene sets. (2019-06-25, Tue) Changes in version 1.4.0 - Bioconductor 3.9 release Changes in version 1.3.2 - dotplot supports setting x to other variable, e.g. NES (2019-01-10, Thu) - mv vignette to clusterProfiler-book. Changes in version 1.2.0 - Bioconductor 3.8 release Changes in version 1.1.5 - gsearank for plotting ranked list of genes belong to specific gene set (2018-07-04, Wed) Changes in version 1.1.4 - base_size parameter in gseaplot2 (2018-06-21, Thu) Changes in version 1.1.3 - pmcplot for plotting pubmed trend (2018-06-14, Thu) - ggtable for plotting table - gseaplot2 now accepts a vector of geneSetID (2018-06-13, Wed) Changes in version 1.1.2 - emapplot supports showCategory parameter to accept a vector of Description (2018-05-29, Tue) - bug fixed of showCategory parameter for vector of Description in cnetplot - https://support.bioconductor.org/p/109438/#109451 - gseaplot2 that mimic the figure generated by broad institute's GSEA software (2018-05-28, Mon) Changes in version 1.1.1 - cnetplot supports showCategory parameter to accept a vector of Description - https://github.com/GuangchuangYu/DOSE/issues/20#issuecomment-391802809 Changes in version 1.0.0 - Bioconductor 3.7 release Changes in version 0.99.14 - node_label = TRUE parameter in cnetplot (2018-04-08, Sun ) - drop NA in dotplot <2018-03-19, Mon> - https://twitter.com/S_Canchi/status/974440351162294272 - enable using formula to specify x axis in dotplot Changes in version 0.99.13 - fixed goplot issue by imporint ggraph <2018-03-12, Mon> - https://github.com/GuangchuangYu/enrichplot/issues/5 - Error in grid.Call(C_convert, x, as.integer(whatfrom), as.integer(whatto), : invalid line type - dotplot now supports orderBy and decreasing parameters to specify the order of dots by order(x[[orderBy]], decreasing=decreasing) Changes in version 0.99.9 - defined upsetplot (2018-01-30, Tue) - all visualization methods were defined as S4 methods (2018-01-29, Mon) Changes in version 0.99.5 - defined all visualization functions as generic functions (2018-01-03, Wed) - add colorEdge parameter in cnetplot - update docs enrichplot 0.99.3 - import ggplot2::rel to fix R check (2017-11-28, Tue) enrichplot 0.99.0 - ready to submit to Bioconductor (2017-11-28, Tue) enrichplot 0.0.3 - heatplot and gseaplot (2017-11-28, Tue) - ridgeplot, barplot and dotplot derived from DOSE (2017-11-28, Tue) - cnetplot (2017-11-28, Tue) enrichplot 0.0.2 - vignette added (2017-11-28, Tue) - goplot for plotting induced GO DAG (2017-11-27, Mon) enrichplot 0.0.1 - emapplot for plotting enrichment map (2017-11-23)